= Cite Brainstorm in your publications =
Once you are done with your analyses performed with Brainstorm, proper citation would be greatly appreciated; thank you!
== How to cite... ==
'''... Brainstorm'''
* Data analysis was performed with Brainstorm (Tadel et al. 2011), which is documented and freely available for download online under the GNU general public license (http://neuroimage.usc.edu/brainstorm).
* Group analysis processing pipeline: Tadel et al. 2019
* Resting state processing pipeline: Niso et al. 2019
'''... forward models'''
* Spherical head model: Mosher et al. 1999
* Overlapping spheres: Huang et al., 1999
* OpenMEEG BEM: Gramfort et al., 2010 / Kybic et al., 2005
'''... inverse methods'''
* Tikhonov-regularized minimum-norm: Baillet et al., 2001. <
>Default value for Tikhonov parameter is λ = 10% of maximum singular value of the lead field.
''' ... the default anatomy'''
* Colin27: MNI brain with a 1mm resolution. [[http://imaging.mrc-cbu.cam.ac.uk/imaging/MniTalairach|More info....]]
'''... FreeSurfer'''
* Whether you are using FreeSurfer for the T1 segmentation, the cortical atlases or the FSAverage subject default: please register on their website ([[https://surfer.nmr.mgh.harvard.edu/registration.html|registration page]]) and cite the appropriate references.
'''... statistical analysis using non-parametric permutation tests'''
* Permutation tests: Pantazis et al., 2005.
'''... the tutorial datasets'''
* TODO
== Publications ==
The previous citations refer to the following publications. Further reading is available in the [[Pub|Publications]] section.
* Baillet S, Mosher JC, Leahy RM (2001)<
>Electromagnetic Brain Mapping<
>IEEE Signal Processing Magazine, 18(6): 14-30, Nov 2001
* Gramfort A, Papadopoulo T, Olivi E, Clerc M (2010)<
>[[http://www.biomedical-engineering-online.com/content/9/1/45|OpenMEEG: opensource software for quasistatic bioelectromagnetics]]<
>BioMedical Engineering OnLine 45:9, 2010
* Huang MX, Mosher JC, Leahy RM (1999)<
>[[http://neuroimage.usc.edu/paperspdf/PMB99.pdf|A sensor-weighted overlapping-sphere head model and exhaustive head model comparison for MEG]]<
>Phys Med Biol, 44:423-440
* Kybic J, Clerc M, Abboud T, Faugeras O, Keriven R, Papadopoulo T (2005)<
>A common formalism for the integral formulations of the forward EEG problem<
>[[http://ieeexplore.ieee.org/xpls/abs_all.jsp?isnumber=30034&arnumber=1375158&count=10&index=1|IEEE Transactions on Medical Imaging, 24:12-28, 2005.]] [[ftp://ftp-sop.inria.fr/odyssee/Publications/2005/kybic-clerc-etal:05.pdf|[pdf]]]
* Leahy RM, Mosher JC, Spencer ME, Huang MX, Lewine JD (1998)<
>[[http://neuroimage.usc.edu/paperspdf/Phantom_Ver2.pdf|A study of dipole localization accuracy for MEG and EEG using a human skull phantom]]<
>Electroencephalography and Clinical Neurophysiology, 107(2):159-73
* Mosher, Leahy RM, Lewis PS (1999)<
>[[http://neuroimage.usc.edu/paperspdf/IEEEBME99.pdf|EEG and MEG: Forward solutions for inverse methods]]<
>IEEE Trans Biomedical Eng, 46(3):245-259, Mar 1999
* Niso G, Tadel F, Bock E, Cousineau M, Santos A, Baillet S (2019)<
>[[https://www.frontiersin.org/articles/10.3389/fnins.2019.00284/abstract|Brainstorm Pipeline Analysis of Resting-State Data from the Open MEG Archive]]<
>Frontiers in Neuroscience, Mar 2019
* Pantazis D, Nichols TE, Baillet S, Leahy RM (2005)<
>A Comparison of Random Field Theory and Permutation Methods for the Statistical Analysis of MEG data<
>Neuroimage, 25(2):383-394, 2005
* Tadel F, Baillet S, Mosher JC, Pantazis D, Leahy RM (2011)<
>[[http://www.hindawi.com/journals/cin/2011/879716/|Brainstorm: A User-Friendly Application for MEG/EEG Analysis]]<
>Computational Intelligence and Neuroscience, vol. 2011, Article ID 879716, 13 pages, 2011. doi:10.1155/2011/879716'' ''
* Tadel F, Bock E, Niso G, Mosher JC, Cousineau M, Pantazis D, Leahy RM, Baillet S (2019)<
>[[https://www.frontiersin.org/articles/10.3389/fnins.2019.00076/full?&utm_source=Email_to_authors_&utm_medium=Email&utm_content=T1_11.5e1_author&utm_campaign=Email_publication&field=&journalName=Frontiers_in_Neuroscience&id=435877#note13|MEG/EEG Group Analysis With Brainstorm]]<
>'''Frontiers in Neuroscience''', Feb 2019