= Introduction tutorials: Editing process =
http://neuroimage.usc.edu/brainstorm/Tutorials

Redactors:

 * '''Francois Tadel''': Montreal Neurological Institute
 * '''Elizabeth Bock''': Montreal Neurological Institute

Reviewers ''[current reviewing status] ''

 * '''Sylvain Baillet''': Montreal Neurological Institute ''[overview 1-14, edited 20-21]''
 * '''Richard Leahy''': University of Southern California ''[validated 1-20]''
 * '''John Mosher''': Cleveland Clinic ''[not started]''
 * '''Dimitrios Pantazis''': Massachusetts Institute of Technology ''[validated 1-15]''

Expected timeline (2016)

 * '''March''': Tutorials #1-#21 (interface and pre-processing)
 * '''April''': Tutorials #22-#24 (source estimation and time-frequency)
 * '''May-June''': Tutorials #25-#28 (statistics and workflows)
 * '''July-Sept''': Cross-validation of the pipeline and the results with MNE, FieldTrip and SPM
 * '''October''': Presentation during a satellite meeting at the Biomag 2016 conference
 * '''Nov-Dec''': Connectivity tutorial

<<BR>><<BR>>

== Tutorial 10: Power spectrum and frequency filters ==
[CODE]

 * Richard, John, Sylvain: Finish the evaluation of the band-pass filters used in Brainstorm
 * Francois: Mark with an extended event the time segments that we cannot trust (edge effect)
 * Francois: Add warning if recordings are not long enough

[ONLINE DOC]

 * Richard, John, Sylvain: Section [[http://neuroimage.usc.edu/brainstorm/Tutorials/ArtifactsFilter#What_filters_to_apply.3F_.5BTODO.5D|What filters to apply?]]
 * Richard, John, Sylvain: Section [[http://neuroimage.usc.edu/brainstorm/Tutorials/ArtifactsFilter#Filters_specifications_.5BTODO.5D|Filters specifications]]

== Tutorial 13: Artifact cleaning with SSP ==
[CODE]

 * Francois: Check the length needed to filter the recordings (after finishing #10) <<BR>>Section [[http://neuroimage.usc.edu/brainstorm/Tutorials/ArtifactsSsp#SSP_Algorithm_.5BTODO.5D|SSP Algorithm]]

== Tutorial 15: Import epochs ==
[ONLINE DOC]

 * Richard, Sylvain, John, Francois: Define recommendations for epoch lengths (after finishing #10)  <<BR>>Section [[http://neuroimage.usc.edu/brainstorm/Tutorials/Epoching#Epoch_length_.5BTODO.5D|Epoch length]]

== Tutorial 20: Head modeling ==
[ONLINE DOC]

 * John: In-depth review of this sensitive tutorial
 * John: Section [[http://neuroimage.usc.edu/brainstorm/Tutorials/HeadModel#Additional_documentation_.5BTODO.5D|References]]

== Tutorial 22: Source estimation ==
[CODE]

 * John: Inverse code: Mixed head models
 * John: Explain the new results obtained with the epilepsy tutorial
 * John: Discuss and validate all the modifications with Alex and Matti
 * John: Noise covariance: Cannot regularize GRAD and MAG at the same time ?
 * Francois: Make the "no regularization" option the default? (changes a lot the range of values)
 * Francois: Remove the warning messages in the interface
 * Francois: Call FieldTrip headmodels and beamformers
 * Francois: Add note in Elekta tutorial: Process MAG and GRAD separately

[ONLINE DOC]

 * John, Richard, Sylvain: Section  [[http://neuroimage.usc.edu/brainstorm/Tutorials/SourceEstimation#Source_estimation_options_.5BTODO.5D|Source estimation options]]
 * John, Richard, Sylvain: Section  [[http://neuroimage.usc.edu/brainstorm/Tutorials/SourceEstimation#Advanced_options_.5BTODO.5D|Advanced options]]
 * John, Richard, Sylvain: Section  [[http://neuroimage.usc.edu/brainstorm/Tutorials/SourceEstimation#Equations_.5BTODO.5D|Equations]]
 * John, Richard, Sylvain: Section  [[http://neuroimage.usc.edu/brainstorm/Tutorials/SourceEstimation#References_.5BTODO.5D|References]]
 * John, Richard, Sylvain: Why are dSPM values 2x lower than Z-score ?
 * John, Richard, Sylvain: What do why [[http://neuroimage.usc.edu/brainstorm/Tutorials/Beamformers|Hui-Ling Beamformers]]?

== Tutorial 24: Time-frequency ==
[CODE]

 * Francois: Enable option "Hide edge effects" for Hilbert (after finishing #10)

[ONLINE DOC]

 * Francois: Hilbert: Link back to the filters tutorial (after finishing #10)

== Tutorial 27: Workflows ==
 * Add Chi2(log) ?

== Tutorial: Dipole scanning ==
 * Add the description of all the measures in [[http://neuroimage.usc.edu/brainstorm/Tutorials/TutDipScan#Significance_mesures_.5BTODO.5D|this section]].

== Tutorial EEG/Epilepsy ==
 * Why sLORETA?
 * Location with the new code?

== Final steps ==
 * Francois: Remove all the wiki pages that are not used
 * Francois: Check all the links in all the pages
 * Francois: Remove useless images from all tutorials
 * Francois: Reference on ResearchGate, Academia and Google Scholar <<BR>>http://neuroimage.usc.edu/brainstorm/Tutorials/AllIntroduction

== Connectivity ==
 * Not documented at all
 * Richard, Sylvain: Define example dataset and precise results to obtain from them
 * Richard: How to deal with unconstrained sources?<<BR>>  http://neuroimage.usc.edu/forums/showthread.php?2401
 * Richard: How to assess significance from connectivity matrices?
 * Francois, Richard, Hossein: Preparation of a tutorial