)>>
'''Starting a new study'''
<>1. [[Tutorials/CreateProtocol|Create a new protocol]]
<>2. [[Tutorials/ImportAnatomy|Import the subject anatomy]]
<>3. [[Tutorials/ExploreAnatomy|Explore the anatomy]]
'''Reviewing'''
<>4. [[Tutorials/ChannelFile|Channel file & MRI coregistration]]
<>5. [[Tutorials/ReviewRaw|Continuous recordings]]
<>6. [[Tutorials/MultipleWindows|Multiple windows]]
<>7. [[Tutorials/EventMarkers|Event markers]]
'''Pre-processing'''
<>8. [[Tutorials/StimDelays|Stimulation delays]]
<>9. [[Tutorials/PipelineEditor|Select files and run processes]]
<>10. [[Tutorials/ArtifactsFilter|Power spectrum & frequency filters]]
<>11. [[Tutorials/ArtifactsDetect|Artifact detection]] [Under construction]
<>12. [[Tutorials/ArtifactsSsp|Artifact cleaning with SSP]] [Under construction]
<>13. [[Tutorials/BadChannels|Bad channels]] [Under construction]
<>14. [[Tutorials/BadSegments|Additional bad segments]] [Under construction]
'''Epoching and averaging''''''<
>[Under construction] '''
<>15. [[Tutorials/Epoching|Import epochs]] [Under construction]
<>16. [[Tutorials/Averaging|Average response]] [Under construction]
<>17. [[Tutorials/ExploreRecordings|Exploring the average response]]
<>18. 2D/3D topography
<>19. [[Tutorials/Colormaps|Colormaps]]
<)>>
'''Source modeling''''''<
>[Under construction] '''
<>20. [[Tutorials/HeadModel|Head model]]
<>21. [[Tutorials/NoiseCovariance|Noise covariance]]
<>22. [[Tutorials/SourceEstimation|Source estimation]]
<>23. [[Tutorials/Scouts|Scouts]]
'''Advanced signal processing''''''<
>[Under construction] '''
<>24. [[Tutorials/TimeFrequency|Time-frequency]]
<>25. [[Tutorials/Statistics|Statistics]]
<>26. [[Tutorials/Connectivity|Connectivity]]
<>27. Phase-amplitude coupling
'''Scripting'''''' <
>[Under construction] '''
<>28. [[Tutorials/Scripting|Complete tutorial script]]
<>29. [[Tutorials/AllIntroduction|All the tutorials on the same page]]
< | |
)>>
== Complete analysis of other datasets ==
1. [[http://neuroimage.usc.edu/brainstorm/Tutorials/Epilepsy|EEG and epilepsy]]
1. [[http://neuroimage.usc.edu/brainstorm/Tutorials/Auditory|MEG auditory tutorial]]
1. [[Tutorials/MedianNerveCtf|MEG median nerve (CTF)]] [Under construction]
1. [[http://neuroimage.usc.edu/brainstorm/Tutorials/Yokogawa|MEG median nerve (Yokogawa/KIT)]]
1. [[http://neuroimage.usc.edu/brainstorm/Tutorials/TutMindNeuromag|MEG median nerve (Elekta-Neuromag)]] [Under construction]
1. [[http://neuroimage.usc.edu/brainstorm/Tutorials/Resting|MEG resting state]]
== Advanced tutorials ==
=== Interface ===
1. [[Tutorials/MontageEditor|Montage editor]] [Under construction]
=== Anatomy and registration ===
1. [[CoordinateSystems|Brainstorm coordinate systems]]
1. MRI segmentation: [[Tutorials/LabelFreeSurfer|FreeSurfer]], [[Tutorials/SegBrainSuite|BrainSuite]], [[Tutorials/SegBrainVisa|BrainVISA]], [[Tutorials/SegCIVET|CIVET]]
1. [[Tutorials/DefaultAnatomy|Using the anatomy templates]] [Under construction]
1. [[Tutorials/TutWarping|Warping default anatomy]]
1. [[Tutorials/CoregisterSubjects|Group analysis: Subjects coregistration]]
1. Group analysis: Averaging [Under construction]
1. [[Tutorials/TutDigitize|Digitize EEG electrodes and head shape]]
1. [[Tutorials/TutRealtime|Real-time head positioning in the CTF MEG system]]
=== Scripting ===
1. [[Tutorials/TutUserProcess|How to write your own process]]
=== Source modeling ===
1. [[Tutorials/TutBem|BEM with OpenMEEG]]
1. [[Tutorials/TutVolSource|Volume source estimation]]
1. [[Tutorials/TutDipScan|Computing and displaying dipoles]]
1. [[Tutorials/Beamformers|Beamforming methods]] [Under construction]
1. [[Tutorials/TutBEst|Maximum Entropy on the Mean (MEM)]] [Under construction]
=== Functional connectivity ===
1. [[Tutorials/TutPac|Phase-amplitude coupling]]
=== Statistics ===
1. [[ExportSpm8|Export volume source maps to SPM8 / SPM12]]
1. [[ExportSpm12|Export surface source maps to SPM12]]
=== Other useful how-to's ===
1. [[CiteBrainstorm|How to cite Brainstorm in your publications]]
1. [[Tutorials/KnownBugs|Known bugs]]
1. [[Tutorials/WorkflowGuide|MEG analysis guidelines for McGill]]
1. [[Tutorials/SSPCookbook|Cleaning artifacts using SSP: examples]]
1. [[Tutorials/ArtifactDetect|Detecting bad segments in continuous recordings]]
1. [[http://neuroimage.usc.edu/brainstorm/Tutorials/MovementDetect|Detect subject movements]]
1. [[http://neuroimage.usc.edu/brainstorm/Tutorials/TutRealtime|Real-time head-tracking for adjusting head position]]
1. [[http://meg.aalip.jp/matlab/index.html|A tutorial in Japanese]] (click on the menu "Brainstorm")
=== Examples ===
1. This video illustrates how Brainstorm can be used for studying amygdala activity:<