= Cite Brainstorm in your publications =
Once you are done with your analyses performed with Brainstorm, proper citation would be greatly appreciated; thank you!

== How to cite... ==
'''... Brainstorm'''

 * Data analysis was performed with Brainstorm (Tadel et al. 2011), which is documented and freely available for download online under the GNU general public license (http://neuroimage.usc.edu/brainstorm).
 * Group analysis processing pipeline: Tadel et al. 2019
 * Resting state processing pipeline: Niso et al. 2019

'''... forward models'''

 * Spherical head model: Mosher et al. 1999
 * Overlapping spheres: Huang et al. 1999
 * OpenMEEG BEM: Gramfort et al. 2010 / Kybic et al. 2005

'''... inverse methods'''

 * Tikhonov-regularized inimum norm: Baillet et al., 2001
 [[http://neuroimage.usc.edu/paperspdf/BailletMosherLeahy_IEEESPMAG_Nov2001.pdf|Electromagnetic brain mapping]], IEEE SP MAG 2001.
 * dSPM: Dale et al. 2000
 * sLORETA: Pascual-Marqui 2002

'''... proprocessing'''

 * SSP: Uusitalo et al. 1999
 * ICA: Makeig et al. 1996

''' ... the default anatomy'''

 * Colin27: MNI brain with a 1mm resolution. [[http://imaging.mrc-cbu.cam.ac.uk/imaging/MniTalairach|More info....]]

'''... FreeSurfer'''

 * Whether you are using FreeSurfer for the T1 segmentation,  the cortical atlases or the FSAverage subject default: please register  on their website ([[https://surfer.nmr.mgh.harvard.edu/registration.html|registration page]]) and cite the appropriate references.

'''... statistical analysis using non-parametric permutation tests'''

 * Permutation tests: Pantazis et al., 2005.

'''... the tutorial datasets'''

 * TODO

== Publications ==
The previous citations refer to the following publications. Further reading is available in the [[Pub|Publications]] section.

 * Baillet S, Mosher JC, Leahy RM (2001)<<BR>>[[https://ieeexplore.ieee.org/document/962275|Electromagnetic  Brain Mapping]] [[[http://neuroimage.usc.edu/paperspdf/BailletMosherLeahy_IEEESPMAG_Nov2001.pdf|pdf]]]<<BR>>IEEE Signal Processing Magazine, 18(6):  14-30, Nov 2001
 * Dale AM, Liu AK, Fischl BR, Buckner RL, Belliveau JW, Lewine JD, Halgren E (2000)<<BR>>
 [[http://www.ncbi.nlm.nih.gov/pubmed/10798392|Dynamic statistical parametric mapping: combining fMRI and MEG for high-resolution imaging of cortical activity]]<<BR>>Neuron, Apr 2000, 26(1):55-67
 * Gramfort A, Papadopoulo T, Olivi E, Clerc M (2010)<<BR>>[[http://www.biomedical-engineering-online.com/content/9/1/45|OpenMEEG: opensource software for quasistatic bioelectromagnetics]]<<BR>>BioMedical Engineering OnLine 45:9, 2010
 * Huang MX, Mosher JC, Leahy RM (1999)<<BR>>[[https://www.ncbi.nlm.nih.gov/pubmed/10070792|A sensor-weighted overlapping-sphere head model and exhaustive head model comparison for MEG]] [[[http://neuroimage.usc.edu/paperspdf/PMB99.pdf|pdf]]]<<BR>>Phys Med Biol, 44:423-440
 * Kybic  J, Clerc M, Abboud T, Faugeras O, Keriven R, Papadopoulo T  (2005)<<BR>>[[http://ieeexplore.ieee.org/xpls/abs_all.jsp?isnumber=30034&arnumber=1375158&count=10&index=1|A  common formalism for the integral  formulations of the forward EEG  problem]] [[ftp://ftp-sop.inria.fr/odyssee/Publications/2005/kybic-clerc-etal:05.pdf|[pdf]]]<<BR>>IEEE Transactions on Medical Imaging, 24:12-28, 2005
 * Leahy RM, Mosher JC, Spencer ME, Huang MX, Lewine JD (1998)<<BR>>[[https://www.ncbi.nlm.nih.gov/pubmed/9751287|A study of dipole localization accuracy for MEG and EEG using a human skull phantom]] [[[http://neuroimage.usc.edu/paperspdf/Phantom_Ver2.pdf|pdf]]]<<BR>>Electroencephalography and Clinical Neurophysiology, 107(2):159-73, 1998
 * Makeig S, Bell AJ, Jung TP, Sejnowski TJ (1996)<<BR>>[[http://papers.nips.cc/paper/1091-independent-component-analysis-of-electroencephalographic-data.pdf|Independent component analysis of electroencephalographic data]]<<BR>>in Advances in Neural Information Processing Systems. Vol. 8, eds D. S. Touretzky, M. C. Mozer, and M. E. Hasselmo (Cambridge, MA: MIT Press), 145–151.
 * Mosher, Leahy RM, Lewis PS (1999)<<BR>>[[https://www.ncbi.nlm.nih.gov/pubmed/10097460|EEG and MEG:  Forward solutions for inverse methods]] [[[http://neuroimage.usc.edu/paperspdf/IEEEBME99.pdf|pdf]]]<<BR>>IEEE Trans Biomedical Eng, 46(3):245-259, Mar 1999
 * Niso G, Tadel F, Bock E, Cousineau M, Santos A, Baillet S (2019)<<BR>>[[https://www.frontiersin.org/articles/10.3389/fnins.2019.00284/abstract|Brainstorm Pipeline Analysis of Resting-State Data from the Open MEG Archive]]<<BR>>Frontiers in Neuroscience, Mar 2019
 * Pantazis D, Nichols TE, Baillet S, Leahy RM (2005)<<BR>>[[https://www.sciencedirect.com/science/article/pii/S1053811904005671|A  Comparison of Random Field Theory and Permutation Methods for the  Statistical Analysis of MEG data]] [[[http://neuroimage.usc.edu/paperspdf/Pantazis_Permutations_NeuroImage.pdf|pdf]]]<<BR>>Neuroimage,  25(2):383-394, 2005
 * Pascual-Marqui RD (2002)<<BR>>[[http://www.ncbi.nlm.nih.gov/pubmed/12575463|Standardized low-resolution brain electromagnetic tomography (sLORETA): technical details]]<<BR>>Methods Find Exp Clin Pharmacol 2002, 24 Suppl D:5-12
 * Tadel F, Baillet S, Mosher JC, Pantazis D, Leahy RM (2011)<<BR>>[[http://www.hindawi.com/journals/cin/2011/879716/|Brainstorm: A  User-Friendly Application for MEG/EEG Analysis]]<<BR>>Computational  Intelligence and Neuroscience, vol. 2011, Article ID 879716, 13 pages,  2011. doi:10.1155/2011/879716'' ''

 * Tadel F, Bock E, Niso G, Mosher JC, Cousineau M, Pantazis D, Leahy RM, Baillet S (2019)<<BR>>[[https://www.frontiersin.org/articles/10.3389/fnins.2019.00076/full?&utm_source=Email_to_authors_&utm_medium=Email&utm_content=T1_11.5e1_author&utm_campaign=Email_publication&field=&journalName=Frontiers_in_Neuroscience&id=435877#note13|MEG/EEG Group Analysis With Brainstorm]]<<BR>>Frontiers in Neuroscience, Feb 2019

 * Uusitalo MA, Ilmoniemi RJ (1997)<<BR>>[[https://link.springer.com/article/10.1007%2FBF02534144?LI=true|Signal-space projection method for separating MEG or EEG into components]]<<BR>>Med. Biol. Eng. Comput. 35, 135–140