= Publications = == Reference article == Tadel F, Baillet S, Mosher JC, Pantazis D, Leahy RM (2011)<
>[[http://www.hindawi.com/journals/cin/2011/879716/|Brainstorm: A User-Friendly Application for MEG/EEG Analysis]]<
> '''Computational Intelligence and Neuroscience''', vol. 2011, ID 879716 See also: [[CiteBrainstorm|How to cite Brainstorm]]. == Publications from Brainstorm users == {{attachment:publications.png}} === Videos === * Tadel F, Baillet S<
>[[http://neuroimage.usc.edu/brainstorm/Screenshots|Brainstorm: Imaging neural activity at the speed of brain]], March 2015 * Bae J, Deshmukh A, Song Y, Riera J<
>[[http://www.jove.com/video/52700/brain-source-imaging-preclinical-rat-models-focal-epilepsy-using-high?status=a54706k|Brain source imaging in preclinical rat models of focal epilepsy using high-resolution EEG recordings]]<
>'''J Visualized Experiments''', e52700 (2015) * Bathelt J, O'Reilly H, De Haan <
>[[http://www.jove.com/video/51705/cortical-source-analysis-of-high-density-eeg-recordings-in-children|Cortical Source Analysis of High-Density EEG Recordings in Children]]<
>'''J Visualized Experiments''', 88 (2014) * Balderston NL, Schultz DH, Baillet S, Helmstetter FJ<
>[[http://www.jove.com/video/50212/how-to-detect-amygdala-activity-with-magnetoencephalography-using?status=a52218k|How to Detect Amygdala Activity with Magnetoencephalography using Source Imaging]]<
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>[[http://www.sciencedirect.com/science/article/pii/S0093934X1500022X|Bilinguals at the ‘‘cocktail party’’: Dissociable neural activityin auditory–linguistic brain regions reveals neurobiological basis for nonnative listeners’ speech-in-noise recognition deficits]]<
>'''Brain and Language''', 143:32–41, April 2015. 1. Billeke P, Armijo A, Castillo D, Lopez T, Zamorano F, Cosmelli D, Aboitiz F<
>[[http://www.sciencedirect.com/science/article/pii/S0006322315001225|Paradoxical expectation: Oscillatory brain activity reveals social interaction impairment in schizophrenia]]<
>'''Biological Psychiatry''', Available online: 19 Feb 2015 1. Cheng CH, Chan PYS, Baillet S, Lin SS<
>[[http://www.hindawi.com/journals/np/aip/302878/|Age-related reduced somatosensory gating is associated with altered alpha frequency desynchronization]]<
>'''Neural Plasticity''', Available online: 24 Feb 2015 1. Cichy RM, Pantazis D<
>[[http://arxiv.org/ftp/arxiv/papers/1503/1503.08030.pdf|Can visual information encoded in cortical columns be decoded from magnetoencephalography data in humans?]], arXiv:1503.08030 1. Cortes-Briones JA, Cahill JD, Ranganathan M, Sewell RA, D'Souza DC, Skosnik PD<
>[[http://www.sciencedirect.com/science/article/pii/S1388245714002181|Testing differences in the activity of event-related potential sources: Important implications for clinical researchers]]<
>'''Clinical Neurophysiology''', 126(1):215–218, Jan 2015 1. Florin E, Baillet S<
>[[http://www.sciencedirect.com/science/article/pii/S1053811915000804|The brain's resting-state activity is shaped by synchronized cross-frequency coupling of oscillatory neural activity]]<
>'''NeuroImage''', Available online: 10 Feb 2015 1. Heers M, Chowdhury RA, Hedrich T, Dubeau F, Hall JA, Lina JM, Grova C, Kobayashi E<
>[[http://www.ncbi.nlm.nih.gov/pubmed/25609211|Localization Accuracy of Distributed Inverse Solutions for Electric and Magnetic Source Imaging of Interictal Epileptic Discharges in Patients with Focal Epilepsy]]<
>'''Brain Topography''', Available online: 22 Jan 2015 1. Moratti S, Strange B, Rubio G<
>[[http://www.sciencedirect.com/science/article/pii/S0165032715001251|Emotional arousal modulation of right temporoparietal cortex in depression depends on parental depression status in women: First evidence]]<
>'''Journal of Affective Disorders''', Available online: 6 Mar 2015 1. Niso G, Rogers C, Moreau JT, Chen LY, Madjar C, Das S, Bock E, Tadel F, Evans A, Jolicoeur P, Baillet S<
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>'''NeuroImage''', Available online: 18-Apr-2015 1. O'Reilly C, Godbout J, Carrier J, Lina JM<
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>[[http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=7072510|Age effect in human brain responses to emotion arousing images: The EEG 3D-vector field tomography modeling approach]]<
>'''IEEE Autonomous Mental Development''', Available online: 30 Mar 2015 1. Seeber M, Scherer R, Wagner J, Solis-Escalante T, Muller-Putz GR<
>[[http://www.sciencedirect.com/science/article/pii/S105381191500227X|High and low gamma EEG oscillations in central sensorimotor areas are conversely modulated during the human gait cycle]]<
>'''NeuroImage''', Available online: 24 Mar 2015 1. Sekihara K, Nagarajan SS<
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>'''NeuroImage''', Published online: 12 May 2014 1. Aissani C, Martinerie J, Yahia-Cherif L, Paradis AL, Lorenceau J<
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>'''Science''', Published online: 10 Apr 2014. 1. Balderston NL, Schultz DH, Baillet S, Helmstetter FJ<
>[[http://www.plosone.org/article/info:doi/10.1371/journal.pone.0096803#pone-0096803-g006|Rapid Amygdala Responses during Trace Fear Conditioning without Awareness]]<
>'''PLOS ONE''', Published online: 13 May 2014 1. Basirat A, Dehaene S, Dehaene-Lambertz G<
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>'''NeuroImage''', Published online: 22 Mar 2014. 1. Billeke P, Zamorano F, Chavez M, Cosmelli D, Aboitiz F<
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>'''PLOS One''', Published online:6 Oct 2014 1. Billeke P, Zamorano F, Lopez T, Rodriguez C, Cosmelli D, Aboitiz F<
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>'''Soc Cogn Affect Neurosci''', Dec 2014, 9(12):2041-8. 1. Blouin J, Saradjian AH, Lebar N, Guillaume A, Mouchnino L<
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>'''J Neurophysiology''', Published: 1 Nov 2014 1. Bojak I, Breakspear M<
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>'''bioRxiv preprint''', Available online: 19 Dec 2014 1. Butorina A, Prokofyev A, Nazarova M, Litvak V, Stroganova T<
>[[http://www.sciencedirect.com/science/article/pii/S1053811914007666|The mirror illusion induces high gamma oscillations in the absence of movement]]<
>'''NeuroImage''', Published online: 19 Sept 2014 1. Cheng CH, Baillet S, Hsiao FJ, Lin YY<
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>'''Biological Psychology''', Available online 15 Nov 2014 1. Cohen MX<
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>'''J Neuroscience Methods''', Published online: 16 Sept 2014 1. Cohen MX<
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>'''MIT Press''', 2014 1. Cichy RM, Pantazis D, Oliva A<
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>'''Nature Neuroscience''' (2014) 1. Di Rienzo F, Guillot A, Mateo A, Daligault S, Delpuech C, Rode G, Collet C<
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>'''Experimental Brain Research''', October 2014 1. Dubarry AS, Badier JM, Trébuchon-Da Fonseca A, Gavaret M, Carron R, Bartolomei F, Liégeois-Chauvel C, Régis J, Chauvel P, Alario FX, Bénar C<
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>'''NeuroImage''', Published online: 23 May 2014 1. Dumas G, Soussignan R, Hugueville L, Martinerie J, Nadel J<
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>'''Brain Research''', Published online: 19 August 2014 1. El Zein M, Gamond L, Conty L, Grèzes J<
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>'''NeuroImage''', Published online: 1 Nov 2014 1. Escobar MJ, Huepe D, Decety J, Sedeño L, Messow MK, Baez S, Rivera-Rei A, Canales-Johnson A, Morales JP, Gómez DM, Schröeder J, Manes F, López V, Ibánez A<
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>'''Scientific Reports''', 2014 Jun 19;4:5354 1. Ferdowsi S, Sanei S, Abolghasemi V<
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>'''Human Brain Mapping''', Published online: 30 Sept 2014 1. Foti D, Weinberg A, Bernat EM, Proudfit GH<
>[[http://www.sciencedirect.com/science/article/pii/S1388245714005148|Anterior cingulate activity to monetary loss and basal ganglia activity to monetary gain uniquely contribute to the feedback negativity]]<
>'''Clinical Neurophysiology''', Published online: 5 Oct 2014 1. Frey J, Gervais R, Fleck S, Lotte F, Hachet M<
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>'''UIST conference''' 2014 1. Galan F, Baker MR, Alter K, Baker ST<
>[[http://onlinelibrary.wiley.com/doi/10.1002/hbm.22653/full|Degraded EEG decoding of wrist movements in absence of kinaesthetic feedback]]<
>'''Human Brain Mapping''', Published online: 12 Oct 2014 1. Gale JT, Gonzalez-Martinez J<
>[[http://my.clevelandclinic.org/ccf/media/Files/Neurological-Institute/medical-professionals/14-neu-542psych-insights2014.pdf#page=4|Examining Decision-making in Epilepsy Patients: Using SEEG to Unravel Pathophysiological Mechanisms in Psychiatry]]<
>'''Cleveland Clinic''', Psychiatry Insights 2014 1. Galvao-Carmona A, González-Rosa JJ, Hidalgo-Muñoz AR, Páramo D, Benítez ML, Izquierdo G3, Vázquez-Marrufo M<
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>'''Front Hum Neurosci''', 8:813 1. Giacometti P, Perdue KL, Diamond SG<
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>'''J Neuroscience Methods''', Published online: 24 Apr 2014 1. Giacometti P, Diamond SG<
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>'''Neurophotonics''', 1(2), 025001 (Sep 02, 2014) 1. Gonzalez-Rosa JJ, Natali F, Tettamanti A, Cursi M, Velikova S, Comi G, Gatti R, Leocani L<
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>'''Behav Brain Res''', Available online: 19 Dec 2014 1. Graziano M, Parra LC, Sigman M<
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>'''J Cogn Neurosci''', Available online: 12 Nov 2014 1. Grosse-Wentrup M, Schölkopf B<
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>'''J Neural Eng''', 11:5 1. Heers M, Hedrich T, An D, Dubeau F, Gotman J, Grova C, Kobayashi E (2014)<
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>'''Human Brain Mapping''', Published online: 24 Feb 2014. 1. Hochman EY, Vaidya AR, Fellows LK<
>[[http://www.plosone.org/article/info:doi/10.1371/journal.pone.0101126|Evidence for a role for the dorsal anterior cingulate cortex in disengaging from an incorrect action]]<
>'''PLOS ONE''', Published online: 26 Jun 2014 1. Horr NK, Braun C, Volz KG<
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>'''Cogn Affect Behav Neurosci''', 14:1271-1285 1. Hsiao FJ, Chen WT, Wang YJ, Yan SH, Lin YY<
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>'''Neurosci Lett''', 2014 Jan 13, 558:47-52 1. Hsiao FJ, Chen WT, Wang PN, Cheng CH, Lin YY<
>[[http://onlinelibrary.wiley.com/doi/10.1002/hbm.22570/abstract|Temporo-frontal functional connectivity during auditory change detection is altered in Alzheimer's disease]]<
>'''Human Brain Mapping''', Published online: 27 Jun 2014 1. Hsiao FJ, Hsieh FY, Chen WT, Chu DC, Lin YY<
>[[http://eeg.sagepub.com/content/early/2014/12/01/1550059414560396.abstract|Altered Resting-State Cortical EEG Oscillations in Patients With Severe Asymptomatic Carotid Stenosis]]<
>'''Clin EEG Neurosci''', Published online: 2 Dec 2014 1. Huang S, Chang WT, Belliveau JW, Hämäläinen M, Ahveninen J<
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>'''Neuroimage''', 2013 Oct 31, pii: S1053-8119(13)01066-5 1. Iasemidis LD, Vlachos I, Krishnan B, Alexopoulos A<
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>'''US Patent''' #20140276187 1. Isik L, Meyers EM, Leibo JZ, Poggio T<
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>'''J Neurophysiol''', 111(1):91-102 1. Johnson MA, Thompson S, Gonzalez-Martinez J, Park HJ, Bulacio J, Najm I, Kahn K, Kerr M, Sarma SV, Gale JT<
>[[http://www.jove.com/video/51947/performing-behavioral-tasks-in-subjects-with-intracranial-electrodes|Performing behavioral tasks in subjects with intracranial electrodes]]<
>'''J Visualized Experiments''', 92 1. Jones SE, Beall EB, Najm I, Sakaie KE, Phillips MD, Zhang M, Gonzalez-Martinez JA<
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>'''Front Neurol''', Published online: 19 Dec 2014 1. Kabdebon C, Leroy F, Simonnet H, Perrot M, Dubois J, Dehaene-Lambertz G<
>[[http://www.sciencedirect.com/science/article/pii/S105381191400411X|Anatomical correlations of the international 10–20 sensor placement system in infants]]<
>'''NeuroImage''', Published online: 23 May 2014 1. Khan S, Lefevre J, Baillet S, Michmizos KP, Ganesan S, Kitzbichler MG, Zetino M, Hamalainen MS, Papadelis C, Kenet T<
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>'''Front Hum Neurosci''', Available online: 2014 May 23 1. Korats G, Ranta R, Le Cam S, Louis-Dorr V<
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>'''IEEE EMBC''' 2014:1123-1126 1. Krishnan B, Vlachos I, Wang ZI, Mosher J, Najm I, Burgess R, Iasemidis L, Alexopoulos AV<
>[[http://www.sciencedirect.com/science/article/pii/S1388245714004052|Epileptic focus localization based on resting state interictal MEG recordings is feasible irrespective of the presence or absence of spikes]]<
>'''Clinical Neurophysiology''', Published online: 11 Aug 2014 1. LaPlante RA, Douw L, Tang W, Stufflebeam SM<
>[[http://www.plosone.org/article/info:doi/10.1371/journal.pone.0113838|The Connectome Visualization Utility: Software for Visualization of Human Brain Networks]]<
>'''PloS one''', Published online: 01 Dec 2014 1. Lenartowicz A, Simpson GV, Haber CM, Cohen MS<
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>'''J Cogn Neurosci''', Published online: 25 Mar 2014 1. Machado A, Marcotte O, Lina J, Kobayashi E, Grova C<
>[[http://biomedicaloptics.spiedigitallibrary.org/article.aspx?articleid=1831976|Optimal optode montage on electroencephalography/functional near-infrared spectroscopy caps dedicated to study epileptic discharges]]<
>'''J Biomedical Optics''', 19(2):026010 1. Machado AG, Gopalakrishnan R, Plow EB, Burgess RC, Mosher JC<
>[[http://classic.jn.physiology.org/content/early/2014/04/25/jn.00193.2014.abstract|A magnetoencephalography study of visual processing of pain anticipation]]<
>'''J Neurophysiol''', 2014 Jul 15, 112(2):276-86 1. Mento G, Tarantino V, Vallesi A, Silvia P<
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>'''J Cognitive Neuroscience''', Published online: 9 Sept 2014 1. Meyer T, Peters J, Zander TO, Scholkopf B, Grosse-Wentrup M<
>[[http://www.jneuroengrehab.com/content/11/1/24|Predicting motor learning performance from Electroencephalographic data]]<
>'''J NeuroEng Rehab''', 2014, 11:24 1. Momin R, Mir HS, Al-Nashash H<
>[[http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=6944636|Brain Source Localization in the Presence of Leadfield Perturbations]]<
>'''IEEE EMBC''', 2014:4551-4554 1. Mousas A, Simos PG, Rezaie R, Papanicolaou AC<
>[[http://link.springer.com/protocol/10.1007/7657_2014_72#page-1|Estimation of Regional Activation Maps and Interdependencies from Minimum Norm Estimates of Magnetoencephalography (MEG) Data]]<
>'''Neuromethods''', 91: 267–289, Published online: 17 May 2014 1. Odabaee M, Tokariev A, Layeghy A, Mesbah M, Colditz PB, Ramon C, Vanhatalo S<
>[[http://www.sciencedirect.com/science/article/pii/S1053811914002626|Neonatal EEG at scalp is focal and implies high skull conductivity in realistic neonatal head models]]<
>'''NeuroImage''', Published online: 13 Apr 2014 1. Ofner P, Muller-Putz GR<
>[[http://ieeexplore.ieee.org/xpl/articleDetails.jsp?tp=&arnumber=6975125|Using a Non-Invasive Decoding Method to Classify Rhythmic Movement Imaginations of the Arm in Two Planes]]<
>'''IEEE Trans Biomed Eng''', Available online: 4 Dec 2014 1. Papadelis C, Ahtam B, Nazarova M, Nimec D, Snyder B, Grant PE, Okada Y<
>[[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4162364/|Cortical somatosensory reorganization in children with spastic cerebral palsy: a multimodal neuroimaging study]]<
>'''Front Hum Neurosci''', Published online: 12 Sep 2014 1. Park HD, Correia S, Ducorps A, Tallon-Baudry C<
>[[http://www.nature.com/neuro/journal/vaop/ncurrent/full/nn.3671.html|Spontaneous fluctuations in neural responses to heartbeats predict visual detection]]<
>'''Nature Neuroscience''', Published online: 09 Mar 2014 1. Pegado F, Comerlato E, Ventura F, Jobert A, Nakamura K, Buiatti M, Ventura P, Dehaene-Lambertz G, Kolinsky R, Morais J, Braga LW, Cohen L, Dehaene S<
>[[http://www.pnas.org/content/early/2014/11/19/1417347111.abstract|Timing the impact of literacy on visual processing]]<
>'''PNAS''', Available online: 23 Oct 2014 1. Pihko E, Nevalainen P, Vaalto S, Laaksonen K, Mäenpää H, Valanne L, Lauronen<
>[[http://onlinelibrary.wiley.com/doi/10.1002/hbm.22462/abstract|Reactivity of sensorimotor oscillations is altered in children with hemiplegic cerebral palsy: A magnetoencephalographic study]]<
>'''Human Brain Mapping''', Published online: 12 Feb 2014 1. Recasens M, Leung S, Grimm S, Nowak R, Escera C<
>[[http://www.sciencedirect.com/science/article/pii/S1053811914010234|Repetition suppression and repetition enhancement underlie auditory memory-trace formation in the human brain: an MEG study]]<
>'''NeuroImage''', 108:75-86, Published online: 17 Dec 2014 1. Rodrigues J, Andrade A<
>[[https://peerj.com/preprints/737/|Synthetic neuronal datasets for benchmarking directed connectivity metrics]]<
>'''PeerJ PrePrint''', Available online: 19 Dec 2014 1. Rogasch NC, Thomson RH, Farzan F, Fitzgibbon BM, Bailey NW, Hernandez-Pavon JC, Daskalakis ZJ, Fitzgerald PB<
>[[http://www.sciencedirect.com/science/article/pii/S105381191400620X|Removing artefacts from TMS-EEG recordings using independent component analysis: Importance for assessing prefrontal and motor cortex network properties]]<
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>"Source localization using recursively applied and projected (RAP) MUSIC," IEEE Trans Biomed Eng, 47(9):1248-60'' [[http://neuroimage.usc.edu/paperspdf/Rap_Music_Final.pdf|pdf]] '' * ''Huang MX, Mosher JC, Leahy RM (1999)<
>"A sensor-weighted overlapping-sphere head model and exhaustive head model comparison for MEG'',''" ''Phys Med Biol'', 44:423-440 [[http://neuroimage.usc.edu/paperspdf/PMB99.pdf|pdf]] '' * Mosher JC, Leahy RM (1998)<
>"Recursive MUSIC: A framework for EEG and MEG source localization," IEEE Trans Biomed Eng, 45(11):1342 -54'' [[http://neuroimage.usc.edu/paperspdf/IEEEBME98_RMUSIC.pdf|pdf]] '' * Leahy RM, Mosher JC, Spencer ME, Huang MX, Lewine JD (1998)<
>"A study of dipole localization accuracy for MEG and EEG using a human skull phantom. Electroencephalography," Clin Neurophysiol, 107(2):159-73'' [[http://neuroimage.usc.edu/paperspdf/Phantom_Ver2.pdf|pdf]] '' * Mosher JC, Leahy RM, Huang MX, Spencer ME (1997)<
>"Modeling versus Accuracy in EEG and MEG data," NFSI '97 in Biomedizinische Technik, 42(1):5-8'' [[http://neuroimage.usc.edu/paperspdf/NFSI97.pdf|pdf]] '' * Phillips JW, Leahy RM, Mosher JC, Timsari B (1997)<
>"Imaging neural activity using MEG and EEG," IEEE Eng Med Biol Mag, 16(3):34-42'' [[http://neuroimage.usc.edu/paperspdf/EMBS_MAG97.pdf|pdf]] '' * Phillips JW, Leahy RM, Mosher JC (1997)<
>"MEG-based imaging of focal neuronal current sources," IEEE Trans Med Imaging, 16(3):338-48''[[http://neuroimage.usc.edu/paperspdf/IEEETMI97.pdf|pdf]] '' * Phillips JW, Leahy RM, Mosher JC (1996)<
>"Dynamic Bayesian imaging using the magnetoencephalogram," Engineering in Medicine and Biology Society, 18th Annual International Conference of the IEEE, 2: 817-18''[[http://neuroimage.usc.edu/paperspdf/dynamic_97.pdf|pdf]] '' * Phillips J, Leahy RM, Mosher JC (1996)<
>"Dynamic MEG Imaging of Focal Neuronal Sources," Proc IEEE Nucl Sci Symp and Medical Imag Conf, 1928-32. ''[[http://neuroimage.usc.edu/paperspdf/Mic96.MEG.pdf|pdf]] '' * Mosher JC, Leahy RM, Lewis PS (1995)<
>"Matrix kernels for MEG and EEG source localization and imaging," Acoustics, Speech, and Signal Processing, ICASSP-95, 5:2943-6''[[http://neuroimage.usc.edu/paperspdf/matrix_95.pdf|pdf]] '' * Lewis PS, Mosher JC, Leahy RM (1995)<
>"Neuromagnetic source reconstruction," Acoustics, Speech, and Signal Processing, ICASSP-95, 5:2911-4''[[http://neuroimage.usc.edu/paperspdf/neuromagnetic_95.pdf|pdf]] '' * Mosher JC, Leahy RM, Lewis PS (1993)<
>"Biomagnetic localization from transient quasi-static events," Acoustics, Speech, and Signal Processing, ICASSP-93, 1:91-4'' [[http://neuroimage.usc.edu/paperspdf/quasi_93.pdf|pdf]] '' * Mosher JC, Leahy RM, Lewis P (1992)<
>"Multiple dipole modeling and localization from spatiotemporal MEG data," IEEE Trans Biomed Eng, 541-57 ''[[http://neuroimage.usc.edu/paperspdf/1992_biomed.pdf|pdf]] '' * Mosher JC, Spencer ME, Leahy RM, Lewis PS (1992)<
>"Error bounds for MEG and EEG source localization," Signals, Systems and Computers, 1992, Conference Record of The Twenty-Sixth Asilomar Conference, 150-5'' [[http://neuroimage.usc.edu/paperspdf/error_92.pdf|pdf]] '' == Other == * Brainstorm has been cited as one of the 50 successful open-source projects that are changing medicine [#22] (2011)'' [[http://nursingassistantguides.com/2009/50-successful-open-source-projects-that-are-changing-medicine/|link]]. '' * Computer world: Open source medicine puts health above profits (2012). [[http://news.idg.no/cw/art.cfm?id=C9F47100-94DE-71C3-1117EA798B9CC965|Link]] == References == Useful, mostly technical, background reading: [1] S Baillet, JC Mosher, and RM Leahy, "Electromagnetic brain mapping," IEEE Signal processing magazine, vol. 18, pp. 14-30, 2001. [2] M Huang, J Mosher, and R Leahy, "A sensor-weighted overlapping-sphere head model and exhaustive head model comparison for MEG," Phys. Med. Biol., vol. 44, no. 2, pp. 423–440, 1999. 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