= Publications = == Reference article == Tadel F, Baillet S, Mosher JC, Pantazis D, Leahy RM (2011)<
>[[http://www.hindawi.com/journals/cin/2011/879716/|Brainstorm: A User-Friendly Application for MEG/EEG Analysis]]<
> '''Computational Intelligence and Neuroscience''', vol. 2011, ID 879716 See also: [[CiteBrainstorm|How to cite Brainstorm]]. == Publications from Brainstorm users == {{attachment:publications.png}} === Videos === * Tadel F, Baillet S<
>[[http://neuroimage.usc.edu/brainstorm/Screenshots|Brainstorm: Imaging neural activity at the speed of brain]], March 2015 * Bae J, Deshmukh A, Song Y, Riera J<
>[[http://www.jove.com/video/52700/brain-source-imaging-preclinical-rat-models-focal-epilepsy-using-high?status=a54706k|Brain source imaging in preclinical rat models of focal epilepsy using high-resolution EEG recordings]]<
>'''J Visualized Experiments''', e52700 (2015) * Bathelt J, O'Reilly H, De Haan <
>[[http://www.jove.com/video/51705/cortical-source-analysis-of-high-density-eeg-recordings-in-children|Cortical Source Analysis of High-Density EEG Recordings in Children]]<
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>[[http://www.sciencedirect.com/science/article/pii/S0093934X1500022X|Bilinguals at the ‘‘cocktail party’’: Dissociable neural activityin auditory–linguistic brain regions reveals neurobiological basis for nonnative listeners’ speech-in-noise recognition deficits]]<
>'''Brain and Language''', 143:32–41, April 2015. 1. Billeke P, Armijo A, Castillo D, Lopez T, Zamorano F, Cosmelli D, Aboitiz F<
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>'''Biological Psychiatry''', Available online: 19 Feb 2015 1. Canales-Johnson A, Silva C, Huepe D, Rivera-Rei A, Noreika V, del Carmen Garcia M, Silva W, Ciraolo C, Vaucheret E, Sedeño L, Couto B, Kargieman L, Baglivo F, Sigman M, Chennu S, Ibáñez A, Rodríguez E, Bekinschtein TA<
>[[http://cercor.oxfordjournals.org/content/early/2015/04/16/cercor.bhv076.full|Auditory feedback differentially modulates behavioral and neural markers of objective and subjective performance when tapping to your heartbeat]]<
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>'''Neuroscience Research''', Available online: 2 May 2015 1. Cheng CH, Chan PYS, Baillet S, Lin SS<
>[[http://www.hindawi.com/journals/np/aip/302878/|Age-related reduced somatosensory gating is associated with altered alpha frequency desynchronization]]<
>'''Neural Plasticity''', Available online: 24 Feb 2015 1. Chowdhury RA, Zerouali Y, Hedrich T, Heers M, Kobayashi E, Lina JM, Grova C<
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>'''Brain Topography''', May 2015 1. Cichy RM, Pantazis D<
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>[[http://www.sciencedirect.com/science/article/pii/S1388245714002181|Testing differences in the activity of event-related potential sources: Important implications for clinical researchers]]<
>'''Clinical Neurophysiology''', 126(1):215–218, Jan 2015 1. Florin E, Baillet S<
>[[http://www.sciencedirect.com/science/article/pii/S1053811915000804|The brain's resting-state activity is shaped by synchronized cross-frequency coupling of oscillatory neural activity]]<
>'''NeuroImage''', Available online: 10 Feb 2015 1. Goodwin BD, Butson CR<
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>[[http://www.ncbi.nlm.nih.gov/pubmed/25609211|Localization Accuracy of Distributed Inverse Solutions for Electric and Magnetic Source Imaging of Interictal Epileptic Discharges in Patients with Focal Epilepsy]]<
>'''Brain Topography''', Available online: 22 Jan 2015 1. Jiang J, Zhang Q, Van Gaal S <
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>'''NeuroImage''', Published online: 12 May 2014 1. Aissani C, Martinerie J, Yahia-Cherif L, Paradis AL, Lorenceau J<
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>'''PLoS One''', Published online: 29 Apr 2014 1. Baldauf D, Desimone R<
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>'''PLOS ONE''', Published online: 13 May 2014 1. Basirat A, Dehaene S, Dehaene-Lambertz G<
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>'''Cognition''', 5 May 2014, 132(2):137-150. 1. Bathelt J, O'Reilly H, De Haan M<
>[[http://www.jove.com/video/51705/cortical-source-analysis-of-high-density-eeg-recordings-in-children|Cortical Source Analysis of High-Density EEG Recordings in Children]]<
>'''J Visualized Experiments''', 88 1. Becker H, Albera L, Comon P, Haardt M, Birot G, Wendling F, Gavaret M, Benar CG, Merlet I<
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>'''NeuroImage''', Published online: 22 Mar 2014. 1. Billeke P, Zamorano F, Chavez M, Cosmelli D, Aboitiz F<
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>'''PLOS One''', Published online:6 Oct 2014 1. Billeke P, Zamorano F, Lopez T, Rodriguez C, Cosmelli D, Aboitiz F<
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>'''Soc Cogn Affect Neurosci''', Dec 2014, 9(12):2041-8. 1. Blouin J, Saradjian AH, Lebar N, Guillaume A, Mouchnino L<
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>'''Experimental Brain Research''', October 2014 1. Dubarry AS, Badier JM, Trébuchon-Da Fonseca A, Gavaret M, Carron R, Bartolomei F, Liégeois-Chauvel C, Régis J, Chauvel P, Alario FX, Bénar C<
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>'''NeuroImage''', Published online: 23 May 2014 1. Dumas G, Soussignan R, Hugueville L, Martinerie J, Nadel J<
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>'''Brain Research''', Published online: 19 August 2014 1. El Zein M, Gamond L, Conty L, Grèzes J<
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>'''NeuroImage''', Published online: 1 Nov 2014 1. Escobar MJ, Huepe D, Decety J, Sedeño L, Messow MK, Baez S, Rivera-Rei A, Canales-Johnson A, Morales JP, Gómez DM, Schröeder J, Manes F, López V, Ibánez A<
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>'''Scientific Reports''', 2014 Jun 19;4:5354 1. Ferdowsi S, Sanei S, Abolghasemi V<
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>'''Human Brain Mapping''', Published online: 30 Sept 2014 1. Foti D, Weinberg A, Bernat EM, Proudfit GH<
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>'''Clinical Neurophysiology''', Published online: 5 Oct 2014 1. Frey J, Gervais R, Fleck S, Lotte F, Hachet M<
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>'''UIST conference''' 2014 1. Galan F, Baker MR, Alter K, Baker ST<
>[[http://onlinelibrary.wiley.com/doi/10.1002/hbm.22653/full|Degraded EEG decoding of wrist movements in absence of kinaesthetic feedback]]<
>'''Human Brain Mapping''', Published online: 12 Oct 2014 1. Gale JT, Gonzalez-Martinez J<
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>'''J Neuroscience Methods''', Published online: 24 Apr 2014 1. Giacometti P, Diamond SG<
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>'''J Cogn Neurosci''', Available online: 12 Nov 2014 1. Grosse-Wentrup M, Schölkopf B<
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>'''J Neural Eng''', 11:5 1. Heers M, Hedrich T, An D, Dubeau F, Gotman J, Grova C, Kobayashi E (2014)<
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>'''Human Brain Mapping''', Published online: 24 Feb 2014. 1. Hochman EY, Vaidya AR, Fellows LK<
>[[http://www.plosone.org/article/info:doi/10.1371/journal.pone.0101126|Evidence for a role for the dorsal anterior cingulate cortex in disengaging from an incorrect action]]<
>'''PLOS ONE''', Published online: 26 Jun 2014 1. Horr NK, Braun C, Volz KG<
>[[http://link.springer.com/article/10.3758/s13415-014-0286-7#page-1|Feeling before knowing why: The role of the orbitofrontal cortex in intuitive judgments - an MEG study]]<
>'''Cogn Affect Behav Neurosci''', 14:1271-1285 1. Hsiao FJ, Chen WT, Wang YJ, Yan SH, Lin YY<
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>'''Neurosci Lett''', 2014 Jan 13, 558:47-52 1. Hsiao FJ, Chen WT, Wang PN, Cheng CH, Lin YY<
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>'''Human Brain Mapping''', Published online: 27 Jun 2014 1. Hsiao FJ, Hsieh FY, Chen WT, Chu DC, Lin YY<
>[[http://eeg.sagepub.com/content/early/2014/12/01/1550059414560396.abstract|Altered Resting-State Cortical EEG Oscillations in Patients With Severe Asymptomatic Carotid Stenosis]]<
>'''Clin EEG Neurosci''', Published online: 2 Dec 2014 1. Huang S, Chang WT, Belliveau JW, Hämäläinen M, Ahveninen J<
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>'''J Visualized Experiments''', 92 1. Jones SE, Beall EB, Najm I, Sakaie KE, Phillips MD, Zhang M, Gonzalez-Martinez JA<
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>'''Front Neurol''', Published online: 19 Dec 2014 1. Kabdebon C, Leroy F, Simonnet H, Perrot M, Dubois J, Dehaene-Lambertz G<
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>'''NeuroImage''', Published online: 23 May 2014 1. Khan S, Lefevre J, Baillet S, Michmizos KP, Ganesan S, Kitzbichler MG, Zetino M, Hamalainen MS, Papadelis C, Kenet T<
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>'''IEEE EMBC''' 2014:1123-1126 1. Krishnan B, Vlachos I, Wang ZI, Mosher J, Najm I, Burgess R, Iasemidis L, Alexopoulos AV<
>[[http://www.sciencedirect.com/science/article/pii/S1388245714004052|Epileptic focus localization based on resting state interictal MEG recordings is feasible irrespective of the presence or absence of spikes]]<
>'''Clinical Neurophysiology''', Published online: 11 Aug 2014 1. LaPlante RA, Douw L, Tang W, Stufflebeam SM<
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>'''PloS one''', Published online: 01 Dec 2014 1. Lenartowicz A, Simpson GV, Haber CM, Cohen MS<
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>'''J Cogn Neurosci''', Published online: 25 Mar 2014 1. Machado A, Marcotte O, Lina J, Kobayashi E, Grova C<
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>'''J Biomedical Optics''', 19(2):026010 1. Machado AG, Gopalakrishnan R, Plow EB, Burgess RC, Mosher JC<
>[[http://classic.jn.physiology.org/content/early/2014/04/25/jn.00193.2014.abstract|A magnetoencephalography study of visual processing of pain anticipation]]<
>'''J Neurophysiol''', 2014 Jul 15, 112(2):276-86 1. Mento G, Tarantino V, Vallesi A, Silvia P<
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>'''J Cognitive Neuroscience''', Published online: 9 Sept 2014 1. Meyer T, Peters J, Zander TO, Scholkopf B, Grosse-Wentrup M<
>[[http://www.jneuroengrehab.com/content/11/1/24|Predicting motor learning performance from Electroencephalographic data]]<
>'''J NeuroEng Rehab''', 2014, 11:24 1. Momin R, Mir HS, Al-Nashash H<
>[[http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=6944636|Brain Source Localization in the Presence of Leadfield Perturbations]]<
>'''IEEE EMBC''', 2014:4551-4554 1. Mousas A, Simos PG, Rezaie R, Papanicolaou AC<
>[[http://link.springer.com/protocol/10.1007/7657_2014_72#page-1|Estimation of Regional Activation Maps and Interdependencies from Minimum Norm Estimates of Magnetoencephalography (MEG) Data]]<
>'''Neuromethods''', 91: 267–289, Published online: 17 May 2014 1. Odabaee M, Tokariev A, Layeghy A, Mesbah M, Colditz PB, Ramon C, Vanhatalo S<
>[[http://www.sciencedirect.com/science/article/pii/S1053811914002626|Neonatal EEG at scalp is focal and implies high skull conductivity in realistic neonatal head models]]<
>'''NeuroImage''', Published online: 13 Apr 2014 1. Ofner P, Muller-Putz GR<
>[[http://ieeexplore.ieee.org/xpl/articleDetails.jsp?tp=&arnumber=6975125|Using a Non-Invasive Decoding Method to Classify Rhythmic Movement Imaginations of the Arm in Two Planes]]<
>'''IEEE Trans Biomed Eng''', Available online: 4 Dec 2014 1. Papadelis C, Ahtam B, Nazarova M, Nimec D, Snyder B, Grant PE, Okada Y<
>[[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4162364/|Cortical somatosensory reorganization in children with spastic cerebral palsy: a multimodal neuroimaging study]]<
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>"On MEG Forward Modelling using Multipolar Expansions," Phys Med Biol, 47(4):523-55 * Baillet S, Mosher JC, Leahy RM (2001)<
>"Electromagnetic Brain Mapping," IEEE Signal Processing Magazine, 18(6):14-30'' [[http://neuroimage.usc.edu/paperspdf/BailletMosherLeahy_IEEESPMAG_Nov2001.pdf|pdf]] '' * Ermer JJ, Mosher JC, Baillet S, Leahy RM (2001)<
>"Rapidly recomputable EEG forward models for realistic head shapes," Phys Med Biol, 46(4):1265-1281'' [[http://neuroimage.usc.edu/paperspdf/rapid_01.pdf|pdf]] '' * Ermer JJ, Mosher JC, Huang MX, Leahy RM (2000)<
>"Paired MEG data set source localization using recursively applied and projected (RAP) MUSIC," IEEE Trans Biomed Eng, 47(9):1248-60'' [[http://neuroimage.usc.edu/paperspdf/RAP_00.pdf|pdf]] '' * Mosher JC, Baillet S, Jerbi K, Leahy RM (2000)<
>"MEG multipolar modeling of distributed sources using RAP-MUSIC," Signals, Systems and Computers 2000, Conference Record of the Thirty-Fourth Asilomar Conference, 1:318-322'' [[http://neuroimage.usc.edu/paperspdf/MEG_00.pdf|pdf]] '' === 1990-2000 === * Mosher JC, Baillet S, Leahy RM (1999)<
>"EEG Source Localization and Imaging Using Multiple Signal Classification Approaches," J Clin Neurophysiol, 16(3):225-38 * Mosher JC, Leahy RM, Shattuck DW, Baillet S (1999)<
>"MEG Source Imaging using Multipolar Expansions," In 16th Conference on Information Processing in Medical Imaging, LCNS, pp. 15–28''[[http://neuroimage.usc.edu/paperspdf/IPMI99.pdf|pdf]] '' * Mosher JC, Leahy RM, Lewis PS (1999)<
>"EEG and MEG: forward solutions for inverse methods," IEEE Trans Biomed Eng, 46(3):245-59'' [[http://neuroimage.usc.edu/paperspdf/IEEEBME99.pdf|pdf]] '' * Mosher JC, Leahy RM (1999)<
>"Source localization using recursively applied and projected (RAP) MUSIC," IEEE Trans Biomed Eng, 47(9):1248-60'' [[http://neuroimage.usc.edu/paperspdf/Rap_Music_Final.pdf|pdf]] '' * ''Huang MX, Mosher JC, Leahy RM (1999)<
>"A sensor-weighted overlapping-sphere head model and exhaustive head model comparison for MEG'',''" ''Phys Med Biol'', 44:423-440 [[http://neuroimage.usc.edu/paperspdf/PMB99.pdf|pdf]] '' * Mosher JC, Leahy RM (1998)<
>"Recursive MUSIC: A framework for EEG and MEG source localization," IEEE Trans Biomed Eng, 45(11):1342 -54'' [[http://neuroimage.usc.edu/paperspdf/IEEEBME98_RMUSIC.pdf|pdf]] '' * Leahy RM, Mosher JC, Spencer ME, Huang MX, Lewine JD (1998)<
>"A study of dipole localization accuracy for MEG and EEG using a human skull phantom. Electroencephalography," Clin Neurophysiol, 107(2):159-73'' [[http://neuroimage.usc.edu/paperspdf/Phantom_Ver2.pdf|pdf]] '' * Mosher JC, Leahy RM, Huang MX, Spencer ME (1997)<
>"Modeling versus Accuracy in EEG and MEG data," NFSI '97 in Biomedizinische Technik, 42(1):5-8'' [[http://neuroimage.usc.edu/paperspdf/NFSI97.pdf|pdf]] '' * Phillips JW, Leahy RM, Mosher JC, Timsari B (1997)<
>"Imaging neural activity using MEG and EEG," IEEE Eng Med Biol Mag, 16(3):34-42'' [[http://neuroimage.usc.edu/paperspdf/EMBS_MAG97.pdf|pdf]] '' * Phillips JW, Leahy RM, Mosher JC (1997)<
>"MEG-based imaging of focal neuronal current sources," IEEE Trans Med Imaging, 16(3):338-48''[[http://neuroimage.usc.edu/paperspdf/IEEETMI97.pdf|pdf]] '' * Phillips JW, Leahy RM, Mosher JC (1996)<
>"Dynamic Bayesian imaging using the magnetoencephalogram," Engineering in Medicine and Biology Society, 18th Annual International Conference of the IEEE, 2: 817-18''[[http://neuroimage.usc.edu/paperspdf/dynamic_97.pdf|pdf]] '' * Phillips J, Leahy RM, Mosher JC (1996)<
>"Dynamic MEG Imaging of Focal Neuronal Sources," Proc IEEE Nucl Sci Symp and Medical Imag Conf, 1928-32. ''[[http://neuroimage.usc.edu/paperspdf/Mic96.MEG.pdf|pdf]] '' * Mosher JC, Leahy RM, Lewis PS (1995)<
>"Matrix kernels for MEG and EEG source localization and imaging," Acoustics, Speech, and Signal Processing, ICASSP-95, 5:2943-6''[[http://neuroimage.usc.edu/paperspdf/matrix_95.pdf|pdf]] '' * Lewis PS, Mosher JC, Leahy RM (1995)<
>"Neuromagnetic source reconstruction," Acoustics, Speech, and Signal Processing, ICASSP-95, 5:2911-4''[[http://neuroimage.usc.edu/paperspdf/neuromagnetic_95.pdf|pdf]] '' * Mosher JC, Leahy RM, Lewis PS (1993)<
>"Biomagnetic localization from transient quasi-static events," Acoustics, Speech, and Signal Processing, ICASSP-93, 1:91-4'' [[http://neuroimage.usc.edu/paperspdf/quasi_93.pdf|pdf]] '' * Mosher JC, Leahy RM, Lewis P (1992)<
>"Multiple dipole modeling and localization from spatiotemporal MEG data," IEEE Trans Biomed Eng, 541-57 ''[[http://neuroimage.usc.edu/paperspdf/1992_biomed.pdf|pdf]] '' * Mosher JC, Spencer ME, Leahy RM, Lewis PS (1992)<
>"Error bounds for MEG and EEG source localization," Signals, Systems and Computers, 1992, Conference Record of The Twenty-Sixth Asilomar Conference, 150-5'' [[http://neuroimage.usc.edu/paperspdf/error_92.pdf|pdf]] '' == Other == * Brainstorm has been cited as one of the 50 successful open-source projects that are changing medicine [#22] (2011)'' [[http://nursingassistantguides.com/2009/50-successful-open-source-projects-that-are-changing-medicine/|link]]. '' * Computer world: Open source medicine puts health above profits (2012). [[http://news.idg.no/cw/art.cfm?id=C9F47100-94DE-71C3-1117EA798B9CC965|Link]] == References == Useful, mostly technical, background reading: [1] S Baillet, JC Mosher, and RM Leahy, "Electromagnetic brain mapping," IEEE Signal processing magazine, vol. 18, pp. 14-30, 2001. [2] M Huang, J Mosher, and R Leahy, "A sensor-weighted overlapping-sphere head model and exhaustive head model comparison for MEG," Phys. Med. Biol., vol. 44, no. 2, pp. 423–440, 1999. 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[17] D Pantazis, TE Nichols, S Baillet, and RM Leahy, "A Comparison of Random Field Theory and Permutation Methods for the Statistical Analysis of MEG data," Neuroimage, vol. 25, pp. 355-368, April 2005. [18] S Baillet, JC Mosher, and RM Leahy, "Brainstorm beta release: a Matlab software package for MEG signal processing and source localization and visualization," Neuroimage, vol. 11, p. 915, 2000. [19] JC Mosher, S Baillet, F Darvas, D Pantazis, E Kucukaltun-Yildirim, and RM Leahy, "Brainstorm Electromagnetic Imaging Software," IJBEM, vol. 7, no. 2, pp. 189-190, 2005. [20] A Tzelepi, N Laskaris, A Amditis, and Z Kapoula, "Cortical activity preceding vertical saccades: A MEG study," Brain Research, 2010. [21] F Amor, S Baillet, V Navarro, C Adam, J Martinerie, and MLV Quyen, "Cortical local and long-range synchronization interplay in human absence seizure initiation," Neuroimage, vol. 45, no. 3, pp. 950-962, April 2009. 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