= Known bugs =
== Main window and database ==
 * Multiple screens: does not work in all the configurations<<BR>>Cause: Too many possible configuration possible (each version of Linux and Matlab handle this in a different way) <<BR>>Workaround: work only with your main screen

 * Tree is not updated well and some nodes are missing<<BR>>Cause: Unpredictible order of execution of Java/Matlab operations<<BR>>Workaround: Press F5 to refresh
 * Colormap sliders for contrast / brightness do not work with versions of Matlab < 7.4<<BR>>Workaround: Manipulate the colormap by clicking on the colorbar and moving up/down (brightness) and left/right (contrast)
 * Some user preferences are not saved in compiled versions
 * Tree menu: "File > XTerm" does not work with all the linux distributions
 * Tree menu: "Group conditions" does not update all the filename links (in results files, linkresults files, etc.)
 * Display time series t=[0,end] + Display time series t=[begin,end]: time bounds are not good for the second figure
 * Save figures as AVI movies: only available on Windows operating system
 * Popup menus and "Open file" dialog take a few seconds to appear on some XP systems

== Figures issues (recordings / results) ==
 * Stat: t-values cannot be displayed on 3D MRI slices
 * Colormap menus do not work from the 3D figures with some versions of Matlab (eg. R2007a)<<BR>>Workaround: Use the Colormaps menu in the main Brainstorm window.
 * Channel selection on 2D Residuals : don't work properly for magnetometers only (indices issue)
 * MRI Viewer may not work well on MacOS
 * 2D/3D topography of modelized data (Fsynth) are always display with EEG colormap, even it is MEG .
 * 2D/3D topography of modelized data (Fsynth): does not work for multimodal reconstruction
 * Modelized data / Residuals: no sensors selection available
 * "Save image" may capture a blank image on Linux

== Computation issues ==
 * Tree menu "Project on default anatomy" : does not work for kernel / absolute values
 * Tree menu "Project on default anatomy" : does not work for kernels if there are some bad channels
 * Tree menu "Project on default anatomy" :  cause Out of memory errors when processing FULL results (=> proceed by time blocks)
 * OS_MEG crashes Matlab when scalp in not very well aligned with sensors<<BR>>Workaround: align your them well...
 * OS_MEG (overlapping spheres) fails when the scalp surface is not perfect (some garbage inside the head)<<BR>>Workaround: do your scalp extraction with FreeSurfer
 * Permutation tests do not work on "kernel only" results

== Scientific issues ==
 * Grand average computation does not weight the different subjects with the number of trials for each subject
 * New t-tests and old t-test do not give the same results, because the processing of bad channels is different:
  * Old tests: reject a channel when it is bad at least for one file
  * New tests: reject a channel only when it is bad in all the files