= Aarhus, Denmark: December 10, 2013 =
== Important notes ==
 * Working with MEG/EEG recordings  involves a lot of computational resources and large display windows.  Therefore we recommand that you bring a laptop with a decent processing  capacity and a screen '''larger than 12"'''.
 * You would also add to your comfort by bringing an '''external mouse'''. Most of the manipulations are done with the mouse, and some involve an intensive use of the scrolling operation. A mouse wheel or the "two-finger move" on !MacBooks are perfect for this, but this operation is not always easy to perform on some laptops.
 * Don't forget your '''power adapter'''...

== Requirements ==
Before installing Brainstorm, you need to install either Matlab or the Matlab Compiler Runtime (MCR) library.

 * '''With a Matlab license''': No operating system restrictions, any Matlab version >= '''R2006b '''(7.3)
 * '''Without Matlab''': You need to be able to install the '''MCR R2013b''' (8.2):
  * __Windows__: Any version
  * __Linux__: Ubuntu 12.04+, RH 6.x, Debian 6.x, SUSE 11.3+
  * __MacOS__: MacOSX 10.7.4+ (Lion), 10.8 (Mountain Lion), 10.9 (Mavericks)
  * Note that Linux and MacOSX need '''recent systems '''
  * More details: [[http://www.mathworks.com/support/sysreq/current_release/index.html?sec=mac|Mathworks website]]

For installing the MCR, those operating systems constrains can be very annoying. Please consider this problem in advance because you may need to upgrade your system before coming to the workshop. If you can't install the MCR on your laptop, you can chose between:

 * Upgrading MacOSX or your Linux distribution,
 * Installing Matlab (any version),
 * Borrowing another laptop for the workshop.

== Installation instructions ==
Before  coming to the workshop, you  need to download the software and the  tutorial dataset from the  Brainstorm website (300 to 650Mb). It  requires a free  registration for demographics purposes. To streamline  troubleshooting and instructions during the session, please save all the  downloaded files '''__on your Desktop__'''.

 1. From the Brainstorm [[http://neuroimage.usc.edu/brainstorm3_register/download.php|Download]] page, log in or create a Brainstorm account (registration is free)
 1. You will then be able to download the following files to '''your Desktop''' '''folder''':
  * '''Brainstorm software''': brainstorm_YYMMDD.zip  (45 Mb)
  * '''Tutorial dataset''': sample_workshop_'''fullday'''.zip (250 Mb)
 1. Note: if you already have Brainstorm installed, make sure that the  version was released<<BR>><<HTML(<FONT color=red>)>>'''after November 23th'''<<HTML(</FONT>)>>.
 1. Unzip the two zip files
 1. Delete the zip files / the installation files
 1. Create a folder "'''brainstorm_db'''" on your '''Desktop '''folder
 1. Final check: you should have now 3 folders on your Desktop:
  * '''brainstorm3''': Program folder, with the Matlab source code and the compiled executable
  * '''brainstorm_db''': Folder for the Brainstorm database (empty)
  * '''sample_workshop_fullday''': Example dataset to be used during the training session
 1. Now run Brainstorm, to make sure it starts fine (read carefully the following section)

== Running Brainstorm for the first time ==
==== With Matlab ====
 1. Start Matlab
 1. '''DO''' '''NOT '''add the ''brainstorm3'' folder to your path: Brainstorm will take care of that,
 1. Go to the ''brainstorm3'' folder from the Matlab command window,
 1. Type "''brainstorm''" in the Matlab command window and press ''enter,''
 1. When  asked for the location of the Brainstorm database folder, pick the   folder "brainstorm_db" you have just created on the Desktop.

==== Without Matlab ====
 1. Download the '''MCR R2013b (8.2)''' for your operating system: [[http://www.mathworks.com/products/compiler/mcr/|Mathworks website]]
 1. Follow the instructions to install the MCR:
  * __Windows__: Double-click on the .exe and follow the instructions
  * __Linux__: From a terminal, unzip .zip, then run ./install
  * __MacOS__: Click on the zip file to unzip it, then click on "InstallForMacOSX"
 1. On MacOSX, if you get errors installing the MCR, you may have to install Oracle Java 7 manually:
  * Google "download java 7" and follow the instructions
  * Google "download jdk 7" and follow the instructions (you need both the JRE and JDK)
  * Open a terminal, cd to the MCR installation folder, and run manually the install program:<<BR>>cd ~/Downloads/MCR_R2013b_maci64_installer/<<BR>>/install -javadir /Library/Java/JavaVirtualMachines/jdk1.7.0_45.jdk/Contents/Home -v
  * Thank Apple Inc. for making non-Apple platforms so complicated to install
 1. Run the executable file located in ''brainstorm3/bin/R2013b/ ''
  * __Windows__: Double-click on ''brainstorm3.bat''
  * __MacOS__: Double-click on ''brainstorm3.command'' and wait for instructions.
   * If nothing happens, open a terminal and follow the Linux instructions.
  * __Linux__: From a terminal, ''cd brainstorm3/bin/R2013b/''
   * Make sure that the file ''brainstorm3.command'' is executable:<<BR>>=> ''chmod a+x brainstorm3.command ''
   * run ''./brainstorm3.command''
  * Linux & MacOSX: If nothing happens when running brainstorm3.command:
   * Open a terminal and cd to brainstorm3/bin/R2013b/
   * Type: ./brainstorm3.command MCR_DIR
   * MCR_DIR is where the MCR 8.2 is installed (ex: /Applications/MATLAB/MCR/v82)
 1. When   you start Brainstorm for the first time on Linux or MacOS, you will be   prompted to select the folder where you installed the MCR
 1. When asked for the location of the Brainstorm database folder, pick the  folder ''brainstorm_db'' on your Desktop.

== Getting ready for the workshop ==
In  order to make sure that Brainstorm works properly, and to get more  familiar with the software, we recommend that you read and follow at  least the first three online tutorials:

 1. [[Tutorials/BstFolders|Brainstorm architecture]]
 1. [[Tutorials/TutFirstSteps|First steps]]
 1. [[Tutorials/TutImportAnatomy|Importing individual anatomy]]

== Troubleshooting ==
For any technical problem, please contact Francois Tadel ( francois.tadel@mcgill.ca )