Unfortunately, > 50% is not enough as evidenced by failures in our own tutorials where MRIs were defaced, leading to many 0 voxels, but the background is still present.
Good evening!
I was trying the ECoG/sEEG tutorial when I got a weird anatomy display,
I just followed every step to import the protocol's anatomy, but the result doesn't t look like the tutorial's:
This is the result I got from importing the pre-implantation T1 MRI:
[errorecog]
Head mask looks squared!
I followed every step in the tutorial, I already have SPM 12 installed, Matlab 2017b and the last version of BS and I used the BS sample_ecog.zip file
Can you help me please
Thanks in adv…
Hi, I'm reporting here an issue that a user mentioned and I reproduced.
When importing the data for the resting state OMEGA tutorial, it now seems to generate bad head surfaces (extreme example pictured). Did something change recently in this function? These MRIs are somewhat aggressively defaced, so maybe this impacts the threshold used to define the scalp surface? I'm not sure actually how this surface is generated as it is not present in the freesurfer folder and I'm not sure if it is aut…
I did a PR to remove this condition . It can still be done manually with the new option.