Dear Brendan,
My apologies, I misunderstood the question. Using the freesurfer scripts is not something i do often and thus it is a bit too advanced for me. I hope someone else can help you better 
Kind regards,
Steven
Dear Brendan,
My apologies, I misunderstood the question. Using the freesurfer scripts is not something i do often and thus it is a bit too advanced for me. I hope someone else can help you better
Kind regards,
Steven