Correspondence of number commands in the gui with script

FranLop89 · December 2, 2020, 5:57pm

Hello,

For quality control reasons I need to plot many figures of MEG source localizations at the same time, and I created a script that plots them using view_surface_data function.

However, that will only plot one figure and with a particular orientation of the cortical surface. If I click on the figure and press "7", it will duplicate the figure displaying both orientations. Since I have many figures, rather than doing it one by one manually, I was wondering if there is a code correspondance to what I do when I press "7". Hope that makes sense.

Many thanks in advance,

Fran

Francois · December 3, 2020, 3:45pm

figure_3d('SetStandardView', hFig, {'left','right'});

This is documented in the Scripting tutorial:
https://neuroimage.usc.edu/brainstorm/Tutorials/Scripting#Reference:_Display_functions

You can find many examples of this kind in the example tutorial script:

github.com

brainstorm-tools/brainstorm3/blob/master/toolbox/script/tutorial_introduction.m#L106


CortexFile = sSubject.Surface(sSubject.iCortex).FileName;

HeadFile   = sSubject.Surface(sSubject.iScalp).FileName;

% Display MRI

hFigMri1 = view_mri(MriFile);

hFigMri3 = view_mri_3d(MriFile, [], [], 'NewFigure');

hFigMri2 = view_mri_slices(MriFile, 'x', 20); 

pause(0.5);

% Close figures

close([hFigMri1 hFigMri2 hFigMri3]);

% Display scalp and cortex

hFigSurf = view_surface(HeadFile);

hFigSurf = view_surface(CortexFile, [], [], hFigSurf);

hFigMriSurf = view_mri(MriFile, CortexFile);

% Figure configuration

iTess = 2;

panel_surface('SetShowSulci',     hFigSurf, iTess, 1);

panel_surface('SetSurfaceColor',  hFigSurf, iTess, [1 0 0]);

panel_surface('SetSurfaceSmooth', hFigSurf, iTess, 0.5, 0);

panel_surface('SetSurfaceTransparency', hFigSurf, iTess, 0.8);

figure_3d('SetStandardView', hFigSurf, 'left');

pause(0.5);