Hey, the first part of the message only just informs that the kilosort plugin was automatically updated in Brainstorm.
The error is produced in the fitTemplates.m from KiloSort plugin, which is called in line 276 in process_spikesorting_kilosort.m
To have a more insightful error message:
- Could you modify this file:
brainstorm3/toolbox/process/functions/ process_spikesorting_kilosort.m
around line 275
(One line is Updated and 2 lines are Inserted)
From:
try
rez = fitTemplates(rez, DATA, uproj); % fit templates iteratively
catch
if ops.GPU
% ~\.brainstorm\plugins\kilosort\KiloSort-master\CUD?\mexGPUall.m
% needs to be called and compile the .cu files.
% Suggested environment: Matlab 2018a, CUDA 9.0, VS 13.
bst_report('Error', sProcess, sInput, 'Error trying to spike-sort on the GPU. Have you set up CUDA correctly? Check https://github.com/cortex-lab/KiloSort for installation instructions');
return;
else
bst_report('Error', sProcess, sInput, 'Error with Kilosort while training on the CPU');
return;
end
end
To:
try
rez = fitTemplates(rez, DATA, uproj); % fit templates iteratively
catch ME % UPDATED LINE
if ops.GPU
% ~\.brainstorm\plugins\kilosort\KiloSort-master\CUD?\mexGPUall.m
% needs to be called and compile the .cu files.
% Suggested environment: Matlab 2018a, CUDA 9.0, VS 13.
bst_report('Error', sProcess, sInput, 'Error trying to spike-sort on the GPU. Have you set up CUDA correctly? Check https://github.com/cortex-lab/KiloSort for installation instructions');
disp(['ME.message: ', ME.message]) % INSERTED LINE
return;
else
bst_report('Error', sProcess, sInput, 'Error with Kilosort while training on the CPU');
disp(['ME.message: ', ME.message]) % INSERTED LINE
return;
end
end
- And run again with your data
- Let us know the messages you get
P.S. In the reply, you can add ``` (3 backticks) in the line before in and the line after the error message to make it easier to read. For example:
***************************************************************************
** Error: [process_spikesorting_kilosort] Electrophysiology > Unsupervised Spike Sorting > KiloSort
...