Importing Folders from New Freesurfer Versions?

[Francois]

@victorzeng97

We've taken that same FS6.0 dev brain and ran it through FS6.0 stable, first through the 2nd and 3rd recon-all steps, and that didn't work, with the same error. I though it would because I imagine it is the 2nd and 3rd step of recon-all that generates the ?h.white and ?h.BA.annot. We just reran the entirety of the 3 reconall steps, and still that error pops up. I'm going to try running it through FS5.3... though I'm hesitant downgrading that much.

I just want to double check, is Brainstorm suppose to be compatible with FS6.0 stable? It sounds like it is, which is troubling. I'm attaching the recon-all log (as you can see in it - it shifts from 5.1 -> 6.0 -> 6.0 dev for the subfield extraction -> 6.0)

Yes, Brainstorm is supposed to work if you run the recon-all from FS 6 stable without any additional parameters. We've already adapted a few things for this release, like the possibility to have higher volume resolutions than 256x256x256. Maybe there are other things to change.

But I don't understand your multiple passes on this subject...
And the error you get seems to indicate that you have a mixture of multiple executions of recon-all (or a mix of different subjects).
Can you simply try to import the original MRI as a new empty subject (recon-all -i) and then process it entirely with FS6 stable (recon-all -all)?
Is it something you reproduced on multiple subjects?

actually for some reason because I'm a new user I can't upload files, so I'm to try and fix that

If you need to post files: upload the somewhere (dropbox, google drive...) and post a download link here.