Select deep structures/cerebellum in script

[ludocoro]

@Francois

This is now done automatically when importing the anatomy from a FreeSurfer folder: the menu “Import anatomy folder” creates a surface “cortex_cereb” which contains the cortex and the cerebellum

Hi Francois,

Is it possible to generate the surface “cortex_cereb” directly from Brainstorm without using FreeSurfer? For few patients, I cannot generate the anatomy folder using FreeSurfer, so what I did is to import the MRI of the patient and use CAT12 from Brainstorm to generate the surface "cortex", which in this case contains only the cortex without the cerebellum. Then, I used the "aseg atlas" from the default anatomy and combined it with the generated cortex from CAT12. In this way, it generated a surface similar to "cortex_cereb", but its representation is not ideal. If Brainstorm can generate "cortex_cereb" without FreeSurfer, is there a way to do it without using the default anatomy?

Thank you.