BST> SPM12 template found: C:\Users\Mr.Reza\.brainstorm\plugins\spm12\tpm\TPM.nii BST> Checking latest online version for cat12... BST> Processing dependencies: cat12 requires: spm12 BST> Plugin cat12 already loaded: C:\Users\Mr.Reza\.brainstorm\plugins\spm12\toolbox\cat12 SPM12: spm_cat12 (vCAT12.8.2) 20:14:40 - 19/03/2023 ======================================================================== _______ ___ _______ | ____/ / _ \ \_ _/ Expert Mode | |___ / /_\ \ | | Computational Anatomy Toolbox |____/ /_/ \_\ |_| CAT12.8.2 - https://neuro-jena.github.io CAT default file: C:\Users\Mr.Reza\.brainstorm\plugins\spm12\toolbox\cat12\cat_defaults.m Item atlas: No field(s) named warped dartel ------------------------------------------------------------------------ 19-Mar-2023 20:14:45 - Running job #1 ------------------------------------------------------------------------ 19-Mar-2023 20:14:45 - Running 'CAT12: Segmentation' ------------------------------------------------------------------------ CAT12.8.2 r2170: 1/1: .\.brainstorm\tmp\cat12_230319_201437\control.n ------------------------------------------------------------------------ SANLM denoising (medium) Your version of CAT12 is up-to-date. 520s ----------------------------------------------------------------------------- WARNING 01: cat_run_job1639cat_run_job:skullStrippedInputWithSkullStripping Detected skull-stripped or strongly masked image. Skip APP. Use skull-stripped initial affine registration template and TPM without head tissues (class 4 and 5)! BG: 0.00% zeros; 1 object(s); 0 background region(s) 3 cm³; normalized SD of all tissues 0.27 ----------------------------------------------------------------------------- APP: Rough bias correction Initialize 11s Estimate background 5s Initial correction 4s Refine background 4s Final correction 5s Final scaling 43s 218s Correct center-of-mass 4s Affine registration 117s SPM preprocessing 1 (estimate 1 - TPM registration): 2s SPM preprocessing 1 (estimate 2): 2s ---------------------------------------------------------------------------- WARNING 02: cat_run_job1639:nonT1contrast A non-T1 contrast was detected and the NEW EXPERIMENTAL PIPELINE is used! If it is was a high-resolution T1 image, the initial segmentation might have failed, probably due to alignment problems (please check the image orientation). ---------------------------------------------------------------------------- SPM preprocessing 2 (write) Write Segmentation 189s Update segmentation 304s Update skull-stripping 83s Update probability maps 184s Update registration ======================================================================== ALERT 01: cat_main_registration:regError Registration problem due to given input segmentation. Use previous registration. ======================================================================== ------------------------------------------------------------------------ CAT Preprocessing error for control: ------------------------------------------------------------------------ Too many voxels inside a tetrahedron ------------------------------------------------------------------------ 415 - cat_main_registration 780 - cat_main_updateSPM 81 - cat_main 1267 - cat_run_job1639 40 - cat_run_newcatch 1170 - run_job 706 - cat_run 29 - cfg_run_cm 1717 - local_runcj 972 - cfg_util 469 - fill_run_job 247 - spm_jobman 358 - Compute 441 - ComputeInteractive 28 - process_segment_cat12 28 - bst_call 3088 - @(h,ev)bst_call(@process_segment_cat12,'ComputeInteractive',iSubject,iAnatomy) ------------------------------------------------------------------------ Print 'Graphics' figure to: C:\Users\Mr.Reza\.brainstorm\tmp\cat12_230319_201437\report\catreport_control.pdf Remove "C:\Users\Mr.Reza\.brainstorm\tmp\cat12_230319_201437\mri\p1control.nii" from dependency list because it does not exist! One or multiple files do not exist and were removed from the dependency list and following batches will may not work correctly! Remove "C:\Users\Mr.Reza\.brainstorm\tmp\cat12_230319_201437\mri\p2control.nii" from dependency list because it does not exist! One or multiple files do not exist and were removed from the dependency list and following batches will may not work correctly! Remove "C:\Users\Mr.Reza\.brainstorm\tmp\cat12_230319_201437\mri\p3control.nii" from dependency list because it does not exist! One or multiple files do not exist and were removed from the dependency list and following batches will may not work correctly! Remove "C:\Users\Mr.Reza\.brainstorm\tmp\cat12_230319_201437\mri\p4control.nii" from dependency list because it does not exist! One or multiple files do not exist and were removed from the dependency list and following batches will may not work correctly! Remove "C:\Users\Mr.Reza\.brainstorm\tmp\cat12_230319_201437\mri\p5control.nii" from dependency list because it does not exist! One or multiple files do not exist and were removed from the dependency list and following batches will may not work correctly! Remove "C:\Users\Mr.Reza\.brainstorm\tmp\cat12_230319_201437\mri\p6control.nii" from dependency list because it does not exist! One or multiple files do not exist and were removed from the dependency list and following batches will may not work correctly! Remove "C:\Users\Mr.Reza\.brainstorm\tmp\cat12_230319_201437\mri\p0control.nii" from dependency list because it does not exist! One or multiple files do not exist and were removed from the dependency list and following batches will may not work correctly! Remove "C:\Users\Mr.Reza\.brainstorm\tmp\cat12_230319_201437\label\catROI_control.xml" from dependency list because it does not exist! One or multiple files do not exist and were removed from the dependency list and following batches will may not work correctly! Remove "C:\Users\Mr.Reza\.brainstorm\tmp\cat12_230319_201437\mri\iy_control.nii" from dependency list because it does not exist! One or multiple files do not exist and were removed from the dependency list and following batches will may not work correctly! Remove "C:\Users\Mr.Reza\.brainstorm\tmp\cat12_230319_201437\mri\y_control.nii" from dependency list because it does not exist! One or multiple files do not exist and were removed from the dependency list and following batches will may not work correctly! Remove "C:\Users\Mr.Reza\.brainstorm\tmp\cat12_230319_201437\surf\lh.central.control.gii" from dependency list because it does not exist! One or multiple files do not exist and were removed from the dependency list and following batches will may not work correctly! Remove "C:\Users\Mr.Reza\.brainstorm\tmp\cat12_230319_201437\surf\lh.sphere.control.gii" from dependency list because it does not exist! One or multiple files do not exist and were removed from the dependency list and following batches will may not work correctly! Remove "C:\Users\Mr.Reza\.brainstorm\tmp\cat12_230319_201437\surf\lh.sphere.reg.control.gii" from dependency list because it does not exist! One or multiple files do not exist and were removed from the dependency list and following batches will may not work correctly! Remove "C:\Users\Mr.Reza\.brainstorm\tmp\cat12_230319_201437\surf\lh.thickness.control" from dependency list because it does not exist! One or multiple files do not exist and were removed from the dependency list and following batches will may not work correctly! Remove "C:\Users\Mr.Reza\.brainstorm\tmp\cat12_230319_201437\surf\lh.pbt.control" from dependency list because it does not exist! One or multiple files do not exist and were removed from the dependency list and following batches will may not work correctly! Remove "C:\Users\Mr.Reza\.brainstorm\tmp\cat12_230319_201437\surf\rh.central.control.gii" from dependency list because it does not exist! One or multiple files do not exist and were removed from the dependency list and following batches will may not work correctly! Remove "C:\Users\Mr.Reza\.brainstorm\tmp\cat12_230319_201437\surf\rh.sphere.control.gii" from dependency list because it does not exist! One or multiple files do not exist and were removed from the dependency list and following batches will may not work correctly! Remove "C:\Users\Mr.Reza\.brainstorm\tmp\cat12_230319_201437\surf\rh.sphere.reg.control.gii" from dependency list because it does not exist! One or multiple files do not exist and were removed from the dependency list and following batches will may not work correctly! Remove "C:\Users\Mr.Reza\.brainstorm\tmp\cat12_230319_201437\surf\rh.thickness.control" from dependency list because it does not exist! One or multiple files do not exist and were removed from the dependency list and following batches will may not work correctly! Remove "C:\Users\Mr.Reza\.brainstorm\tmp\cat12_230319_201437\surf\rh.pbt.control" from dependency list because it does not exist! One or multiple files do not exist and were removed from the dependency list and following batches will may not work correctly! 19-Mar-2023 21:56:16 - Done 'CAT12: Segmentation' Item 'Central Surfaces', field 'val': Number of matching files (0) less than required (1). 19-Mar-2023 21:56:16 - Failed to update inputs for 'Extract additional surface parameters' Error using harvest Dependencies resolved, but not suitable for this item. In item Central Surfaces: Dependency 1: CAT12: Segmentation (current release): Left Central Surface (out(1).lhcentral(:)) In file "harvest.m" (v5678), function "harvest" at line 47. No executable modules, but still unresolved dependencies or incomplete module inputs. The following modules did not run: Skipped: Extract additional surface parameters *************************************************************************** ** Error: Line 0: MATLABbatch system ** Job execution failed. The full log of this run can be found in MATLAB command window, starting with the lines (look for the line showing the exact #job as displayed in this error message) ** ------------------ ** Running job #1 ** ------------------ ** ** ** Call stack: ** >.m>MATLABbatch system at 0 ** *************************************************************************** >>