= Digimouse: 3D Mouse Atlas =
 . '''Overview''' | [[Digimouse_Data_Acquisition|Data Acquisition]] | [[Digimouse_Registration|Registration]] | [[Digimouse_Creation_of_Atlas|Creation of Atlas]] | [[Digimouse_Simulations|Simulations]] | [[Digimouse_Download|Download]] | [[Digimouse_license|License]]

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Welcome to the Digimouse webpage. Here you’ll find our labeled          atlas as well as the coregistered source data, and surface and volume          tessellations for use in boundary element and finite element modeling.          You are free to use this data and atlas as you wish, but please include          a citation (and if you feel it is appropriate, a weblink to this site          and/or an acknowledgement) in any publications using this data. Please          cite the following paper:

 * B. Dogdas, D. Stout, A. Chatziioannou, RM Leahy, __Digimouse: A 3D Whole Body Mouse Atlas from CT and Cryosection Data__, Phys. Med. Bio, 52: 577-587, 2007. [[http://dx.doi.org/10.1088/0031-9155/52/3/003|http://dx.doi.org/10.1088%2F0031-9155%2F52%2F3%2F003]]

 * D. Stout, P. Chow, R. Silverman, R. M. Leahy, X. Lewis, S. Gambhir, A. Chatziioannou, __Creating a whole body digital mouse atlas with          PET, CT and cryosection images__, Molecular Imaging and Biology.2002; 4(4): S27

Digimouse was generated using coregistered CT and cryosection images          of a 28g nude normal male mouse resulting a matrix size of 380x992x208          and 0.1mm cubical voxels. The structures segmented from these data are:          ''whole brain, external cerebrum, cerebellum, olfactory bulbs, striatum,          medulla, massetter muscles, eyes, lachrymal glands, heart, lungs, liver,          stomach, spleen, pancreas, adrenal glands, kidneys, testes, bladder, skeleton          and skin. ''

<<BR>> <<EmbedObject(anim2.swf,width=568px,height=496px,play=true, loop=true)>>

<<BR>> '''Overlay of the Atlas onto the Cryosections'''

'''~+Final Registered PET, CT, Cryosection images for a coronal slice+~''' <<BR>> {{attachment:pet_coronal_130.jpg||width="142"}} {{attachment:ct_coronal_130.jpg||width="142"}} {{attachment:cryosection_coronal_130.jpg||width="142"}} <<BR>>`       `'''PET'''`              `'''CT'''`         `'''Cryosection''' <<BR>><<BR>><<BR>>