= Digimouse: Download =
 . [[Digimouse|Overview]] | [[Digimouse_Data_Acquisition|Data Acquisition]] | [[Digimouse_Registration|Registration]] | [[Digimouse_Creation_of_Atlas|Creation of Atlas]] | [[Digimouse_Simulations|Simulations]] | '''Download''' | [[Digimouse_license|License]]

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{{{#!wiki tip
Please review the [[Digimouse_license|License]] under which it is distributed.
}}}
=== The Coregistered Data with the Atlas ===
 * Matrix size: 380 x 992 x 208
 * Voxel size: 0.1mm x 0.1mm x 0.1mm
 * Size: ~77MB
 * The data is in ANALYZE format which can be viewed using BrainSuite.
 * [[http://neuroimage.usc.edu/mouse_atlas/pet_data.zip|PET Data]]
 * [[http://neuroimage.usc.edu/mouse_atlas/ct_data.zip|CT Data]]
 * [[http://neuroimage.usc.edu/mouse_atlas/cryo_data.zip|Cryosection Data]]
 * [[http://neuroimage.usc.edu/mouse_atlas/atlas.zip|Atlas Data]]

'''[[http://neuroimage.usc.edu/Digimouse_jiv.html|Java Viewer]] which shows 3D orthogonal views of registered PET, CT, Cryosections                and Atlas''' (You need to enable Java support in your browser in order to run this applet) <<BR>><<BR>>

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=== The Raw Data ===
<<BR>>
||<tablewidth="86%"style="border:none">Download: <<BR>> Matrix size: <<BR>> Voxel size: <<BR>> Size: <<BR>> Format: ||<style="text-align:center;border:none">'''[[http://neuroimage.usc.edu/mouse_atlas/pet_raw_data.zip|PET Data]]''' <<BR>>128 x 127 x 128 <<BR>>  0.4 x 0.4 x 0.6 mm^3^ <<BR>> 8MB <<BR>> Float ||<style="text-align:center;border:none">'''[[http://neuroimage.usc.edu/mouse_atlas/ct_raw_data.zip|CT Data]]'''  <<BR>> 512 x 942 x 512 <<BR>> 0.1 x 0.1 x 0.1 mm^3^ <<BR>> 900MB <<BR>> Float ||<style="text-align:center;border:none">'''[[http://neuroimage.usc.edu/mouse_atlas/raw_cryosections.zip|Cryosection Data]]'''  <<BR>>1704 x 2560 x 418  <<BR>>38.8 x 38.8 x 50um^3^  <<BR>> 600MB <<BR>> jpeg ||




<<BR>>

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=== Tesselated Atlas ===
 * [[http://neuroimage.usc.edu/mouse_atlas/tesselated_atlas.zip|.mat file]] which can be loaded in MATLAB
 * includes .txt file which has the assignments of the tetrahedrons                  to each organ
 * 306,773 elements and 58,244 nodes (16,164 surface nodes and                  42,080 internal nodes)