Introduction tutorials: Editing process

http://neuroimage.usc.edu/brainstorm/Tutorials

Redactors:

• Francois Tadel: Montreal Neurological Institute

• Elizabeth Bock: Montreal Neurological Institute

Reviewers [current reviewing status]

• Sylvain Baillet: Montreal Neurological Institute [overview 1-14, edited 20-21]

• Richard Leahy: University of Southern California [validated 1-20]

• John Mosher: Cleveland Clinic [not started]

• Dimitrios Pantazis: Massachusetts Institute of Technology [validated 1-15]

Expected timeline (2016)

• March: Tutorials #1-#21 (interface and pre-processing)

• April: Tutorials #22-#24 (source estimation and time-frequency)

• May-June: Tutorials #25-#28 (statistics and workflows)

• July-Sept: Cross-validation of the pipeline and the results with MNE, FieldTrip and SPM

• October: Presentation during a satellite meeting at the Biomag 2016 conference

• Nov-Dec: Connectivity tutorial

Tutorial 10: Power spectrum and frequency filters

[CODE]

• Richard, John, Sylvain: Finish the evaluation of the band-pass filters used in Brainstorm
• Francois: Mark with an extended event the time segments that we cannot trust (edge effect)
• Francois: Add warning if recordings are not long enough

[ONLINE DOC]

• Richard, John, Sylvain: Section What filters to apply?

• Richard, John, Sylvain: Section Filters specifications

Tutorial 12: Artifact detection

[ONLINE DOC]

• Beth: Adding examples of the different detection processes. Section Other detection processes

Tutorial 13: Artifact cleaning with SSP

[CODE]

• Francois: Check the length needed to filter the recordings (after finishing #10)
  Section SSP Algorithm

Tutorial 15: Import epochs

[ONLINE DOC]

• Richard, Sylvain, John, Francois: Define recommendations for epoch lengths (after finishing #10)
  Section Epoch length

Tutorial 20: Head modeling

[ONLINE DOC]

• John: In-depth review of this sensitive tutorial

• John: Section References

Tutorial 22: Source estimation

[CODE]

• John: Noise covariance: Cannot regularize GRAD and MAG at the same time ?
• John: Inverse code: NAI
• John: Inverse code: Mixed head models
• Francois: Make the "no regularization" option the default? (changes a lot the range of values)
• Francois: Remove the warning messages in the interface

• Francois: Call FieldTrip headmodels and beamformers

• Francois: Add note in Elekta tutorial: Process MAG and GRAD separately

[ONLINE DOC]

• John, Richard, Sylvain: Section Source estimation options

• John, Richard, Sylvain: Section Advanced options

• John, Richard, Sylvain: Section Equations

• John, Richard, Sylvain: Section References

• John, Richard, Sylvain: Why are dSPM values 2x lower than Z-score ?
• John, Richard, Sylvain: In-depth review of this sensitive tutorial

Tutorial 24: Time-frequency

[CODE]

• Francois: Enable option "Hide edge effects" for Hilbert (after finishing #10)

[ONLINE DOC]

• Francois: Hilbert: Link back to the filters tutorial (after finishing #10)

Tutorial 25: Difference

• Using weighted difference instead of difference? A-sqrt(nB/nA)*B ?

Tutorial 27: Workflows

[ONLINE DOC]

• Add Chi2(log) ?

Tutorial: Dipole scanning

[ONLINE DOC]

• Add the description of all the measures in this section.

Final steps

• Francois: Check all the links in all the pages

• Francois: Reference on ResearchGate, Academia and Google Scholar
  http://neuroimage.usc.edu/brainstorm/Tutorials/AllIntroduction

Connectivity

• Not documented at all
• Richard, Sylvain: Define example dataset and precise results to obtain from them

• Richard: How to deal with unconstrained sources?
  http://neuroimage.usc.edu/forums/showthread.php?2401

• Richard: How to assess significance from connectivity matrices?
• Francois, Richard, Hossein: Preparation of a tutorial

Other analysis scenarios

• Beth: Update or delete: http://neuroimage.usc.edu/brainstorm/Tutorials/WorkflowGuide

• Francois: Update all the tutorials (100+ pages)
• Francois: Remove useless images from all tutorials