Introduction tutorials: Editing process

http://neuroimage.usc.edu/brainstorm/Tutorials

Redactors:

• Francois Tadel: Montreal Neurological Institute

• Elizabeth Bock: Montreal Neurological Institute

Reviewers [current reviewing status]

• Sylvain Baillet: Montreal Neurological Institute [not started]

• Richard Leahy: University of Southern California [validated 1-9]

• John Mosher: Cleveland Clinic [not started]

• Dimitrios Pantazis: Massachusetts Institute of Technology [validated 1-15]

Expected timeline (2016)

• March: Tutorials #1-#21 (interface and pre-processing)

• April: Tutorials #22-#24 (source estimation and time-frequency)

• May-June: Tutorials #25-#28 (statistics and workflows)

• July-Sept: Cross-validation of the pipeline and the results with MNE, FieldTrip and SPM

• October: Presentation during a satellite meeting at the Biomag 2016 conference

• Nov-Dec: Connectivity tutorial

Tutorial 10: Power spectrum and frequency filters

[CODE]

• Richard, John, Sylvain: Finish the evaluation of the band-pass filters used in Brainstorm
• Francois: Mark with an extended event the time segments that we cannot trust
• Francois: Add warning if recordings are not long enough
• Francois: Check that the bandpass filter is always used with enough data (Hilbert transform, SSP)

[ONLINE DOC]

• Richard, John, Sylvain: Section What filters to apply?

• Richard, John, Sylvain: Section Filters specifications

Tutorial 13: Artifact cleaning with SSP

[CODE] [ONLINE DOC]

• Francois: Check the length needed to filter the recordings (after finishing tutorial #10)
  Section SSP Algorithm

Tutorial 15: Import epochs

[ONLINE DOC]

• Richard, Sylvain, John, Francois: Define recommendations for epoch lengths (after finishing #10)
  Section Epoch length

Tutorial 20: Head modelling

[ONLINE DOC]

• John, Richard, Sylvain: In-depth review of this sensitive tutorial

• John, Richard, Sylvain: Section References

Tutorial 22: Source estimation

[CODE]

• John: Dipole scanning: Wrong orientations
• John: Inverse code: sLORETA
• John: Inverse code: NAI
• John: Inverse code: Mixed head models
• John, Richard, Sylvain: How to normalize unconstrained sources ?
• Francois: Remove the warning messages in the interface

• Francois: Call FieldTrip headmodels and beamformers

[ONLINE DOC]

Connectivity

• Richard, Sylvain: Define example dataset and precise results to obtain from them
• Richard: Define

Other analysis scenarios

• Francois: Update all the tutorials (100 pages)
• Francois: Add number of pages in the tutorials

Phantom tutorial (for validation)

• John: Prepare recordings to distribute on the tutorial page

• Francois: Prepare the anatomy
• Francois: Prepare an analysis script
• Francois: Edit the tutorial page

Final steps

• Check that the script tutorial_introduction.m produces the same output as the screen captures
• Check all the links in all the pages
• Check the number of pages for each tutorial

• Reference on ResearchGate, Academia and Google Scholar:
  http://neuroimage.usc.edu/brainstorm/Tutorials/AllIntroduction