Hello,
I'm analyzing one patient's MEG data, and I want to calculate the source and connectivity using Densikan-Killany atlas.
The system didn't register the atlas correctly on the patient's brain surface, because the patient's right frontal lobe has been resected.
Can I adjust the atlas manually to fit the patient's brain, or is there any other method that can fit this problem?
This is common (and expected) for anatomies with large deviations from standard templates.
In the Scouts tabs there are tools that will allow you to modify (add, remove, grow, shrink) scouts as you need:
https://neuroimage.usc.edu/brainstorm/Tutorials/Scouts
Since the Desikan-Killiany atlas is provided a default atlas, it is not possible to modified directly.
Use the menu entry Atlas > New atlas > Copy current atlas to create a copy and edit it.
Thank you for answering!
Can I rearrange the scouts in new atlas by alphabetic order? It is totally out of order after I edited it.
And another problem is, due to the large deviation, the brain lobe detected by the system is wrongly labeled to the new edited scout (as the following screenshot). How can I solve this problem?
Yes, but not directly in the GUI
In the GUI
In Matlab
Scouts variable to the order that you neededName), e.g., 'My ordered atlas'Name, Scouts TessNbVertices) in a mat file: scout_my_ordered_atlas.mat'Back in the GUI
My ordered atlas is now available with your orderJust double-click it as change the name.
Is this what you needed?
Not the scout name. It is the gray label before the scout name.m It seems automatically assigned to the scout.
Oh I got it. It can be edited with the same method you mentioned above. Thank you so much!