I am new to CAT12 and heard lots of good things about it. I am following the instructions detailed in the CAT12-manual.pdf but I am getting the following error:
Bad tissue contrast (BG=0.16, CSF=59.02, GM=746.55, WM=13.26): This can be the result of (i) an improper SPM segmentation caused by failed affine registration, (ii) improper image properties with low contrast-to-noise ratio, or (iii) by preprocessing error. Please check image orientation and quality.
I checked the orientation as suggested in the tutorial, but it looks right?
Can anyone please give me pointers on how to overcome this bug.
To summarize I just opened CAT12 and selected "Segment". I selected the nifti file and clicked on the green arrow in the batch editor.