How can I do time-frequency analysis on continuous data?

You need to recompute the concatenated files.

Please make sure that you have the following lines in the file process_concat.m:

If you don't: update Brainstorm again, something went wrong
Unless you are using the compiled version of Brainstorm?...

If you do: Please post a screen capture showing your file, including the blue tooltip that appears when you leave your mouse for a few seconds over the file (I'd need to know both the file name and the file path for the "spectrum" file).