I've just been told by Chris (Markiewicz) freesurfer's mri_surf2surf function might be doing it but haven't had a chance to have a look. Once I get more info and practices I will report here but for now several links about the function itself is here
https://surfer.nmr.mgh.harvard.edu/fswiki/mri_surf2surf
And I guess Jeff was asking the same question in freesurfer forum so here is the answer he got regarding mri_surf2surf function
https://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg34517.html
I will let you guys know if I can get any improvements but it might take time.
Thank you
Isil Bilgin