In addition, I want to use the thalamus atlas in the default anatomy, so I export the defalt ICBM mri image and used it for Freesurfer rencon-all parcellation and got the atlas. But when I imported the new thalamic volume atlas (subject space), the atlas cannot be overlayed on the default MRI. The error was as below.
when I imported the volume atlas (MNI space), the atlas could be overlayed but it seems the atlas was not well aligned to the MRI.
The file contents of the atlas are as below:
So how can I use the new Freesurfer atlas in the default anatomy?
Thank you very much!
Fang