I have a thalamic maps obtained from diffusion which look-up table with colours and labels in FSLeyes format. Is there a way to have the same table imported in Brainstorm? If not, what is a LUT file format for Brainstorm so I can manually crate one for all subjects.
You would like to import this where, how and to do what?
Can you please be more explicit on what you'd like to do?
Including some figures may help explaining your objectives.
Thanks
Sorry for being too vague! Let me break down what I want to do.
We created a nii.gz mask with 12 areas in FSL, which has a complimentary lookup table with the names and colours for these areas, which we would like to use in Brainstorm analysis too. I created a new volume scouts atlas, and imported the nii.gz mask, using "Volume mask or atlas (dilated, subject space)" option and get all the areas into BS. However, they get randomly assigned colours and only numerical values.
Thank you for the explanation.
No, unfortunately, it is not possible to add information from an external LUT file when reading a custom volume as an atlas.
The easiest might be for you to write a Matlab script to replace the color and label for each scout in the atlas "C17_ftb_n_sp.nii" after loading it, directly in the structure of the cortex file.