Problem with uploading my protocols

Discussions
1

Hello friends,
I have problem....
I have been using Brainstorm with great pleasure since Jan 2024, but when I got back there this morning, I received the following error message when trying to open Brainstorm - all stops at the stage of data upload (I believe). I intalled the new version. Can anybody help, please? Many many thanks
Karine

BST> Downloading brainstorm.jar...

BST> Starting Brainstorm:
BST> =================================
BST> Version: 08-Oct-2024
BST> Compiling main interface files...
BST> Deleting old process reports...
BST> Loading configuration file...
BST> Checking internet connectivity... ok
BST> Initializing user interface...
BST> Starting OpenGL engine... hardware
BST> Reading process folder...
BST> Downloading ICBM152 template...
BST> Installing ICBM152 template...
BST> Loading current protocol...
Unable to perform assignment because the indices on the left side are not compatible with the size of
the right side.

Error in bst_get (line 670)
argout1(iTargetAnalysis) = repmat(ProtocolStudies.AnalysisStudy, size(iTargetAnalysis));

Error in bst_get (line 993)
[argout1, argout2] = bst_get('Study', iAnalStudyInter);

Error in node_create_db_studies (line 99)
[sAnalysisStudy, iAnalysisStudy] = bst_get('AnalysisInterStudy');

Error in panel_protocols>UpdateTree (line 433)
case 'StudiesSubj', [selNode, dbNode, numNodes] = node_create_db_studies(nodeRoot, 'subject', iSearch);

Error in panel_protocols (line 46)
eval(macro_method);

Error in db_load_protocol (line 104)
panel_protocols('UpdateTree');

Error in gui_brainstorm>SetCurrentProtocol (line 1052)
db_load_protocol(iProtocol);

Error in gui_brainstorm (line 34)
eval(macro_method);

Error in bst_startup (line 651)
gui_brainstorm('SetCurrentProtocol', GlobalData.DataBase.iProtocol);

Error in brainstorm (line 126)
bst_startup(BrainstormHomeDir, 1, BrainstormDbDir, TemplateName);

** Error: Line 670: Unable to perform assignment because the indices on the left side are not compatible with the size of the right side.
**
** Call stack:
** >bst_get.m at 670
** >bst_get.m at 993
** >node_create_db_studies.m at 99
** >panel_protocols.m>UpdateTree at 433
** >panel_protocols.m at 46
** >gui_brainstorm.m>CreateWindow/protocolDisplayModeChanged_Callback at 559
** >bst_call.m at 28
** >gui_brainstorm.m>@(h,ev)bst_call(@protocolDisplayModeChanged_Callback,h,ev) at 458
**

Unable to perform assignment because the indices on the left side are not compatible with the size of
the right side.

Error in bst_get (line 670)
argout1(iTargetAnalysis) = repmat(ProtocolStudies.AnalysisStudy, size(iTargetAnalysis));

Error in bst_get (line 993)
[argout1, argout2] = bst_get('Study', iAnalStudyInter);

Error in node_create_db_studies (line 99)
[sAnalysisStudy, iAnalysisStudy] = bst_get('AnalysisInterStudy');

Error in panel_protocols>UpdateTree (line 433)
case 'StudiesSubj', [selNode, dbNode, numNodes] = node_create_db_studies(nodeRoot, 'subject', iSearch);

Error in panel_protocols (line 46)
eval(macro_method);

Error in db_load_protocol (line 104)
panel_protocols('UpdateTree');

Error in gui_brainstorm>SetCurrentProtocol (line 1052)
db_load_protocol(iProtocol);

Error in gui_brainstorm>CreateWindow/protocolComboBoxChanged_Callback (line 574)
SetCurrentProtocol(jItem.getUserData());

** Error: Line 699: Index exceeds the number of array elements. Index must not exceed 0.
**
** Call stack:
** >gui_layout.m>PositionFigure at 699
** >gui_layout.m>TileWindows at 597
** >gui_layout.m>Update at 50
** >gui_layout.m at 33
** >bst_figures.m>CreateFigure at 232
** >bst_figures.m at 59
** >view_timeseries.m at 147
** >bst_call.m at 28
** >tree_callbacks.m>@(h,ev)bst_call(@view_timeseries,filenameRelative,AllMod{iMod},,'NewFigure') at 1444

2

It seems something happened to your database during the update.

  • Could it be that the database folder was inside the brainstorm3 directory?
  • Was this the first time you updated Brainstorm?
3

Hi Raymundo
Many thanks.
No, the database folder was separate.
Yes, I did update for the first time, but this was done after I first had the problem.
Best
Karine

5

Hi Raymundo

As I have a problem with my current database, I downloaded a previous version of my database (from 1 week ago, when everything was working fine). I placed this older version in the brainstorm_db folder in place of the damaged version. The problem is that when I open Brainstorm, the data aren't there, even though I've checked that there were data in this version of my database. It seems to be a problem loading the files.... Do I need to run a specific script or to do something else to load the data from this older version?
Thank you for your help

Regards

Karine

6

Hi Raymundo
Many thanks.
No, the database folder was separate.
Yes, I did update for the first time, but this was done after I first had the problem.
Best
Karine

7

Hi Raymundo,

Finally, I had a protocol whose data had been corrupted and I redid the analyses within a new protocol. After closing brainstorm, when I want to reopen my new protocol, the opening is in read-only mode. Could you help me to solve this problem?

image
image729×189 7.67 KB

Thank you
Regards
Karine

8

If you explore that path, do you see the typical structure for a Brainstorm protocol?

Protocol_Name/              # Protocol folder            
├─ anat/                    # Anatomy data  folder
│  ├─ Subject01/            # Subject folder
├─ data/                    # Functional data folder
│  ├─ Subject01/            # Subject folder
│  ├─ protocol.mat          # .mat file with the Protocol database structure

Can it be that the Protocol was generated when using Brainstorm with a different user?

Is your brainstorm_db directory synchronized in the cloud?
If so, be sure that it is not uploading/downloading when you start Brainstorm