Visualizing hemispheric differences- sans freesurfer

[Francois]

@liamc

Being able to isolate, for example, the left hippocampus, color it a given color and label it, all the while the rest of the brain is still visible (albeit transparent to show this subcortical region)?

I've added a new menu to make this process much easier, documented here:

Select deep structures/cerebellum in script

Then, I used the "aseg atlas" from the default anatomy and combined it with the generated cortex from CAT12. This is definitely not a good idea. If Brainstorm can generate "cortex_cereb" without FreeSurfer, is there a way to do it without using the default anatomy? I added a new menu "Create surfaces", when you right-click on an atlas: https://github.com/brainstorm-tools/brainstorm3/commit/efb5c4a472b687e8fd24f87501a982d55c9e638a Start by updating Brainstorm. After the CAT12 segmentatio…