It seems there is confusion on the nature of the signals.
EEG signals capture the difference of potential (voltage) between two points on the scalp, and it is measured in [Volt]. These signals are in the sensor space (so there is a time series for each sensor).
Once sources are estimated, they are not any more a difference of potential, they are brain activity, or electrical currents (actually current densities) in the brain, they can be [Ampere*m]. These signals are in the source space, thus, there is one time series per vertex in your source space if sources are constrained. Otherwise, If you are working with unconstrained sources there are three time series per vertex). See this post for details on why [Ampere*m] are the units for current density:
This should not a problem, the connectivity metric will compute between time series, regardless of their units. Moreover, most of connectivity metrics are not affected by the scale of the signals. You can check this tutorial where coherence between EMG and sources is computed:
https://neuroimage.usc.edu/brainstorm/Tutorials/CorticomuscularCoherence