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| Once you are done with your analysis, please do not forget about us in the redaction of your publications... | Once you are done with your analysis, please don't forget about us in the redaction of your publications... |
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| == How to cite == '''To cite Brainstorm:''' |
== How to cite... == '''... Brainstorm''' |
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| * Data analysis was performed with Brainstorm (Mosher et al. 2005), which is documented and freely available for download online under the GNU general public license (http://neuroimage.usc.edu/brainstorm). | * Data analysis was performed with Brainstorm (Tadel et al. 2011), which is documented and freely available for download online under the GNU general public license (http://neuroimage.usc.edu/brainstorm). |
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| '''To cite forward modeling:''' | '''... the CTF sample dataset (somtatotopy)''' * The somato-sensory MEG recordings were provided by Dr Sabine Meunier (Hopital de la Salpetriere, Paris) as part of the tutorial dataset distributed with Brainstorm (http://neuroimage.usc.edu/brainstorm). '''... forward models''' |
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| * Boundary Element Method: Mosher et al. 1999 | * OpenMEEG BEM: Gramfort et al., 2010 / Kybic et al., 2005 |
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| '''To cite inverse methods:''' | '''... inverse methods''' |
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| ''' To cite the default anatomy:''' | ''' ... the default anatomy''' |
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| '''To cite statistical analysis using the permutation tests:''' | '''... statistical analysis using the permutation tests''' |
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| * J.C. Mosher, S. Baillet, F. Darvas, D. Pantazis , E.K. Yildirim, R.M. Leahy, “BrainStorm Electromagnetic Imaging Software”, 5th International Symposium on Noninvasive Functional Source Imaging within the Human Brain and Heart (NFSI 2005), Minnesota, May 12-15, 2005. | * Tadel F, Baillet S, Mosher JC, Pantazis D, Leahy RM, “Brainstorm: A User-Friendly Application for MEG/EEG Analysis,” Computational Intelligence and Neuroscience, vol. 2011, Article ID 879716, 13 pages, 2011. doi:10.1155/2011/879716 * J.C. Mosher, S. Baillet, F. Darvas, D. Pantazis , E.K. Yildirim, R.M. Leahy, “!BrainStorm Electromagnetic Imaging Software”, 5th International Symposium on Noninvasive Functional Source Imaging within the Human Brain and Heart (NFSI 2005), Minnesota, May 12-15, 2005. |
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| * A. Gramfort, T. Papadopoulo, E. Olivi, M. Clerc. OpenMEEG: opensource software for quasistatic bioelectromagnetics, [[http://www.biomedical-engineering-online.com/content/9/1/45|BioMedical Engineering OnLine 45:9, 2010]] * Kybic J, Clerc M, Abboud T, Faugeras O, Keriven R, Papadopoulo T. A common formalism for the integral formulations of the forward EEG problem. [[http://ieeexplore.ieee.org/xpls/abs_all.jsp?isnumber=30034&arnumber=1375158&count=10&index=1|IEEE Transactions on Medical Imaging, 24:12-28, 2005.]] [[ftp://ftp-sop.inria.fr/odyssee/Publications/2005/kybic-clerc-etal:05.pdf|[pdf]]] |
Cite Brainstorm in your publications
Once you are done with your analysis, please don't forget about us in the redaction of your publications...
How to cite...
... Brainstorm
Data analysis was performed with Brainstorm (Tadel et al. 2011), which is documented and freely available for download online under the GNU general public license (http://neuroimage.usc.edu/brainstorm).
... the CTF sample dataset (somtatotopy)
The somato-sensory MEG recordings were provided by Dr Sabine Meunier (Hopital de la Salpetriere, Paris) as part of the tutorial dataset distributed with Brainstorm (http://neuroimage.usc.edu/brainstorm).
... forward models
- Spherical head model: Mosher et al. 1999
- Overlapping spheres: Huang et al., 1999
- OpenMEEG BEM: Gramfort et al., 2010 / Kybic et al., 2005
... inverse methods
Tikhonov-regularized minimum-norm: Baillet et al., 2001.
Default value for Tikhonov parameter is λ = 10% of maximum singular value of the lead field.- LCMV Beamformer: Baillet et al., 2001
... the default anatomy
Default MRI: MNI/Colin27 brain with a 1mm resolution. More info....
- Cortex, cerebellum and white matter surfaces extracted with BrainVISA software
- Scalp surface comes from MNE software (fsaverage)
... statistical analysis using the permutation tests
- Permutation tests: Pantazis et al., 2005.
Publications
The previous citations refers to the following publications. More publications available in the Publications section.
- Tadel F, Baillet S, Mosher JC, Pantazis D, Leahy RM, “Brainstorm: A User-Friendly Application for MEG/EEG Analysis,” Computational Intelligence and Neuroscience, vol. 2011, Article ID 879716, 13 pages, 2011. doi:10.1155/2011/879716
J.C. Mosher, S. Baillet, F. Darvas, D. Pantazis , E.K. Yildirim, R.M. Leahy, “BrainStorm Electromagnetic Imaging Software”, 5th International Symposium on Noninvasive Functional Source Imaging within the Human Brain and Heart (NFSI 2005), Minnesota, May 12-15, 2005.
- M.X. Huang, J.C. Mosher and R.M. Leahy, "A sensor-weighted overlapping-sphere head model and exhaustive head model comparison for MEG",Physics in Medicine and Biology, 44(2): 423-440, Feb. 1999.
- S. Baillet, J.C. Mosher, R.M. Leahy, "Electromagnetic Brain Mapping", IEEE Signal Processing Magazine, 18(6): 14-30, Nov 2001.
- D. Pantazis, T. E Nichols, S. Baillet, RM Leahy, A Comparison of Random Field Theory and Permutation Methods for the Statistical Analysis of MEG data, Neuroimage, 25(2):383-394, 2005
- J.C. Mosher, R.M. Leahy, and P.S. Lewis, “EEG and MEG: Forward solutions for inverse methods,” IEEE Trans. Biomed. Eng., vol. 46, pp. 245-259, 1999.
A. Gramfort, T. Papadopoulo, E. Olivi, M. Clerc. OpenMEEG: opensource software for quasistatic bioelectromagnetics, BioMedical Engineering OnLine 45:9, 2010
Kybic J, Clerc M, Abboud T, Faugeras O, Keriven R, Papadopoulo T. A common formalism for the integral formulations of the forward EEG problem. IEEE Transactions on Medical Imaging, 24:12-28, 2005. [pdf]