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| = Installation: MCR 2012b = On MacOSX, the transition between Apple Java and Oracle Java is a terrible mess. It makes it very difficult to run correctly the compiled version of Brainstorm. This page provides instructions for running it with Matlab 2012b, to ensure the compatibility with older MacOSX systems that run Apple Java 6. |
= Binary installation: R2012b = This stand-alone version is currently not distributed in the main package.<<BR>>You can download it separately: [[http://neuroimage.usc.edu/bst/download.php|bst_bin_R2012b_YYMMDD.zip]] |
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| Brainstorm is available in two distinct forms, both available for Windows, Linux and MacOSX: | Operating system: |
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| * An open-source Matlab application (Matlab license required) * Necessary: Any Matlab version >= '''R2006b (7.3) ''' * No specific operating system requirements * Optional: Signal Processing Toolbox (for frequency filtering and resampling) * A stand-alone Java executable (Matlab license not required) * Requires the free download of the Matlab Compiler Runtime library ('''MCR''') * MCR version: '''R2012b (8.0)''' * __Windows__: Any version * __Linux__: Ubuntu 11.10 & 12.04, RH 5.x and 6.x, Debian 6.x, SUSE 11.1+ * __MacOS__: MacOSX 10.6.4+ (Snow Leopard), 10.7 (Lion), 10.8 (Mountain Lion) * More details: [[http://www.mathworks.com/support/sysreq/release2012b/macintosh.html|Mathworks website]] |
* '''Windows''': Any version ([[http://www.mathworks.com/support/sysreq/release2012b/index.html|details]]) * '''Linux''': Ubuntu 11.10 & 12.04, RH 5.x and 6.x, Debian 6.x, SUSE 11.1+ ([[http://www.mathworks.com/support/sysreq/release2012b/linux.html|details]]) * '''MacOS''': MacOSX 10.6.4+ (Snow Leopard), 10.7 (Lion), 10.8 (Mountain Lion) ([[http://www.mathworks.com/support/sysreq/release2012b/macintosh.html|details]]) Matlab Compiler Runtime: Download for free from the [[http://www.mathworks.com/products/compiler/mcr/|Mathworks website]] * MCR version: '''R2012b (8.0)''' == Installation == 1. Download the latest bst_bin_R2012b_....zip archive 1. Unzip it somewhere on your computer, for example: * __Windows__: Program Files\brainstorm3 * __Linux__: /usr/local/brainstorm3 (or ~/brainstorm3 if you are not admin) * __MacOS__: Applications/brainstorm3 1. Create a new folder "'''brainstorm_db'''" for the Brainstorm database, for example: * __Windows__: My documents\brainstorm_db * __Linux__: /home/username/brainstorm_db * __MacOS__: Documents/brainstorm_db |
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| ==== Without Matlab ==== 1. Download the '''Matlab Compiler Runtime (MCR)''' corresponding to your operating system, version '''2012b''' (v8.0). This is a set of libraries that will let you run Brainstorm on your computer without Matlab. Click here: [[http://www.mathworks.com/products/compiler/mcr/index.html|Link to the Mathworks website]]. |
1. Download the '''MCR R2012b (8.0)''' for your operating system: [[http://www.mathworks.com/products/compiler/mcr/|Mathworks website]] |
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| * Windows: Double-click on the .exe and follow the instructions * Linux: From a terminal, unzip .zip, then run ./install * MacOS: Click on the zip file to unzip it, then click on "InstallForMacOSX". It is not clear on the Mathworks website, but the current MCR requires a version of MacOSX >= 10.6.4 (Snow Leopard), with Apple Java installed ([[http://www.mathworks.com/support/sysreq/release2012b/macintosh.html|see link]]). If you can't install the MCR on your Mac, you can chose between: updating MacOSX or installing a full copy of the Matlab environment. |
* __Windows__: Double-click on the .exe and follow the instructions * __Linux__: From a terminal, unzip .zip, then run ./install * __MacOS__: Click on the zip file to unzip it, then click on "InstallForMacOSX" |
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| * Windows: Double-click on brainstorm3.bat * Linux: From a terminal, cd brainstorm3/bin/R2012b/ * Make sure that the file "''brainstorm3.command''" is executable: => chmod a+x brainstorm3.command * run ''./brainstorm3.command '' * MacOS: Double-click on ''brainstorm3.command ''and wait for instructions 1. When you start Brainstorm for the first time on Linux or MacOS, you will be prompted to select the folder where you installed the MCR |
* __Windows__: Double-click on ''brainstorm3.bat'' * __MacOS__: Double-click on ''brainstorm3.command ''and wait for instructions * If nothing happens, open a terminal and follow the Linux instructions. * __Linux__: From a terminal, cd brainstorm3/bin/R2012b/ * Make sure that the file "''brainstorm3.command''" is executable:<<BR>>=> chmod a+x brainstorm3.command * Run: ''./brainstorm3.command '' * If nothing happens, run: ''./brainstorm3.command MCR_DIR''<<BR>>MCR_DIR is where the MCR 8.0 is installed (ex: /Applications/MATLAB/MCR/v80) 1. If you can't get to run properly the compiled version, you can try with another binary release: 1. * Matlab 2013b: [[InstallationR2013b|See instructions]] * Matlab 2014a: [[InstallationR2012b|See instructions]] 1. When you start Brainstorm for the first time on Linux or MacOS, you will be prompted to select the folder where you installed the MCR |
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| 1. Visit the [[http://neuroimage.usc.edu/brainstorm/Tutorials|Tutorials]] section to learn how to use most features of the software. | 1. Visit the [[Tutorials]] section to learn how to use most features of the software. == Updates == The update function does not work with the stand-alone versions. To upgrade Brainstorm, follow this procedure: * Delete the brainstorm3 folder (don't worry, it will not delete your database) * Download the latest release of the Brainstorm version * Follow the installation instructions (see above) |
Binary installation: R2012b
This stand-alone version is currently not distributed in the main package.
You can download it separately: bst_bin_R2012b_YYMMDD.zip
Requirements
Operating system:
Windows: Any version (details)
Linux: Ubuntu 11.10 & 12.04, RH 5.x and 6.x, Debian 6.x, SUSE 11.1+ (details)
MacOS: MacOSX 10.6.4+ (Snow Leopard), 10.7 (Lion), 10.8 (Mountain Lion) (details)
Matlab Compiler Runtime: Download for free from the Mathworks website
MCR version: R2012b (8.0)
Installation
- Download the latest bst_bin_R2012b_....zip archive
- Unzip it somewhere on your computer, for example:
Windows: Program Files\brainstorm3
Linux: /usr/local/brainstorm3 (or ~/brainstorm3 if you are not admin)
MacOS: Applications/brainstorm3
Create a new folder "brainstorm_db" for the Brainstorm database, for example:
Windows: My documents\brainstorm_db
Linux: /home/username/brainstorm_db
MacOS: Documents/brainstorm_db
Start Brainstorm
Download the MCR R2012b (8.0) for your operating system: Mathworks website
- Install the MCR:
Windows: Double-click on the .exe and follow the instructions
Linux: From a terminal, unzip .zip, then run ./install
MacOS: Click on the zip file to unzip it, then click on "InstallForMacOSX"
- Run the program in brainstorm3/bin/R2012b/
Windows: Double-click on brainstorm3.bat
MacOS: Double-click on brainstorm3.command and wait for instructions
- If nothing happens, open a terminal and follow the Linux instructions.
Linux: From a terminal, cd brainstorm3/bin/R2012b/
Make sure that the file "brainstorm3.command" is executable:
=> chmod a+x brainstorm3.commandRun: ./brainstorm3.command
If nothing happens, run: ./brainstorm3.command MCR_DIR
MCR_DIR is where the MCR 8.0 is installed (ex: /Applications/MATLAB/MCR/v80)
- If you can't get to run properly the compiled version, you can try with another binary release:
* Matlab 2013b: See instructions
Matlab 2014a: See instructions
- When you start Brainstorm for the first time on Linux or MacOS, you will be prompted to select the folder where you installed the MCR
- When asked for the location of the Brainstorm database folder, pick the folder "brainstorm_db" you have just created
Visit the Tutorials section to learn how to use most features of the software.
Updates
The update function does not work with the stand-alone versions. To upgrade Brainstorm, follow this procedure:
- Delete the brainstorm3 folder (don't worry, it will not delete your database)
- Download the latest release of the Brainstorm version
- Follow the installation instructions (see above)