|
Size: 2231
Comment:
|
Size: 3149
Comment:
|
| Deletions are marked like this. | Additions are marked like this. |
| Line 1: | Line 1: |
| = Installation: MCR 2012b = On MacOSX, the transition between Apple Java and Oracle Java is a terrible mess. It makes it very difficult to run correctly the compiled version of Brainstorm. This page provides instructions for running it with Matlab 2012b, to ensure the compatibility with older MacOSX systems that run Apple Java 6. |
= Binary installation: R2012b = This stand-alone version is currently not distributed in the main package.<<BR>>You can download it separately: [[http://neuroimage.usc.edu/bst/download.php|bst_bin_R2012b_YYMMDD.zip]] |
| Line 5: | Line 5: |
| Requiements for installing the stand-alone Java executable (Matlab license not required) | ==== Operating system ==== * '''Windows''': Any version ([[http://www.mathworks.com/support/sysreq/release2012b/index.html|details]]) * '''Linux''': Ubuntu 11.10 & 12.04, RH 5.x and 6.x, Debian 6.x, SUSE 11.1+ ([[http://www.mathworks.com/support/sysreq/release2012b/linux.html|details]]) * '''MacOS''': MacOSX 10.6.4+ (Snow Leopard), 10.7 (Lion), 10.8 (Mountain Lion) ([[http://www.mathworks.com/support/sysreq/release2012b/macintosh.html|details]]) |
| Line 7: | Line 10: |
| * Requires the free download of the Matlab Compiler Runtime library ('''MCR''') * MCR version: '''R2012b (8.0)''' * __Windows__: Any version * __Linux__: Ubuntu 11.10 & 12.04, RH 5.x and 6.x, Debian 6.x, SUSE 11.1+ * __MacOS__: MacOSX 10.6.4+ (Snow Leopard), 10.7 (Lion), 10.8 (Mountain Lion) * More details: [[http://www.mathworks.com/support/sysreq/release2012b/macintosh.html|Mathworks website]] |
==== Matlab Compiler Runtime ==== * '''MCR version''': R2012b (8.0) * Download for free from the [[http://www.mathworks.com/products/compiler/mcr/|Mathworks website]] == Installation == 1. Download the latest bst_bin_R2012b_....zip archive 1. Unzip it somewhere on your computer, for example: * __Windows__: Program Files\brainstorm3 * __Linux__: /usr/local/brainstorm3 (or ~/brainstorm3 if you are not admin) * __MacOS__: Applications/brainstorm3 1. Create a new folder "'''brainstorm_db'''" for the Brainstorm database, for example: * __Windows__: My documents\brainstorm_db * __Linux__: /home/username/brainstorm_db * __MacOS__: Documents/brainstorm_db |
| Line 15: | Line 27: |
| ==== Without Matlab ==== 1. Download the '''Matlab Compiler Runtime (MCR)''' corresponding to your operating system, version '''2012b''' (v8.0). This is a set of libraries that will let you run Brainstorm on your computer without Matlab. Click here: [[http://www.mathworks.com/products/compiler/mcr/index.html|Link to the Mathworks website]]. |
1. Download the '''MCR R2012b (8.0)''' for your operating system: [[http://www.mathworks.com/products/compiler/mcr/|Mathworks website]] |
| Line 21: | Line 32: |
| * __MacOS__: Click on the zip file to unzip it, then click on "InstallForMacOSX". It is not clear on the Mathworks website, but the current MCR requires a version of MacOSX >= 10.6.4 (Snow Leopard), with Apple Java installed ([[http://www.mathworks.com/support/sysreq/release2012b/macintosh.html|see link]]). If you can't install the MCR on your Mac, you can chose between: updating MacOSX or installing a full copy of the Matlab environment. |
* __MacOS__: Click on the zip file to unzip it, then click on "InstallForMacOSX" |
| Line 25: | Line 34: |
| * __Windows__: Double-click on brainstorm3.bat * __Linux__: From a terminal, cd brainstorm3/bin/R2012b/ * Make sure that the file "''brainstorm3.command''" is executable:<<BR>>=> chmod a+x brainstorm3.command * run ''./brainstorm3.command '' |
* __Windows__: Double-click on ''brainstorm3.bat'' |
| Line 30: | Line 36: |
| * __Linux__: From a terminal, run:<<BR>>''cd brainstorm3/bin/R2012b/''<<BR>>''./brainstorm3.command '' 1. Problems with MacOS or Linux: * From a terminal, make sure that the file "''brainstorm3.command''" is executable:<<BR>>''chmod a+x brainstorm3.command'' * If nothing happens, run: <<BR>>''./brainstorm3.command MCR_DIR''<<BR>>MCR_DIR is where the MCR 8.0 is installed (ex: /Applications/MATLAB/MCR/v80) * If you can't get this run, you can with another binary release:<<BR>>Matlab 2013b: [[InstallationR2013b|See instructions]]<<BR>>Matlab 2014a: [[InstallationR2014a|See instructions]] 1. On Linux or MacOS, you will be prompted to select the folder where you installed the MCR. 1. When asked for the Brainstorm database folder, pick the "brainstorm_db" you have just created. 1. Follow all the 12+3 introduction tutorials: [[Tutorials]] == Updates == The automatic updates do not work with the stand-alone versions, follow this procedure: * Delete the brainstorm3 folder (don't worry, it will not delete your database) * Download the latest release of the Brainstorm version * Follow the installation instructions (see above) |
Binary installation: R2012b
This stand-alone version is currently not distributed in the main package.
You can download it separately: bst_bin_R2012b_YYMMDD.zip
Requirements
Operating system
Windows: Any version (details)
Linux: Ubuntu 11.10 & 12.04, RH 5.x and 6.x, Debian 6.x, SUSE 11.1+ (details)
MacOS: MacOSX 10.6.4+ (Snow Leopard), 10.7 (Lion), 10.8 (Mountain Lion) (details)
Matlab Compiler Runtime
MCR version: R2012b (8.0)
Download for free from the Mathworks website
Installation
- Download the latest bst_bin_R2012b_....zip archive
- Unzip it somewhere on your computer, for example:
Windows: Program Files\brainstorm3
Linux: /usr/local/brainstorm3 (or ~/brainstorm3 if you are not admin)
MacOS: Applications/brainstorm3
Create a new folder "brainstorm_db" for the Brainstorm database, for example:
Windows: My documents\brainstorm_db
Linux: /home/username/brainstorm_db
MacOS: Documents/brainstorm_db
Start Brainstorm
Download the MCR R2012b (8.0) for your operating system: Mathworks website
- Install the MCR:
Windows: Double-click on the .exe and follow the instructions
Linux: From a terminal, unzip .zip, then run ./install
MacOS: Click on the zip file to unzip it, then click on "InstallForMacOSX"
- Run the program in brainstorm3/bin/R2012b/
Windows: Double-click on brainstorm3.bat
MacOS: Double-click on brainstorm3.command and wait for instructions
Linux: From a terminal, run:
cd brainstorm3/bin/R2012b/
./brainstorm3.command
- Problems with MacOS or Linux:
From a terminal, make sure that the file "brainstorm3.command" is executable:
chmod a+x brainstorm3.commandIf nothing happens, run:
./brainstorm3.command MCR_DIR
MCR_DIR is where the MCR 8.0 is installed (ex: /Applications/MATLAB/MCR/v80)If you can't get this run, you can with another binary release:
Matlab 2013b: See instructions
Matlab 2014a: ?See instructions
- On Linux or MacOS, you will be prompted to select the folder where you installed the MCR.
- When asked for the Brainstorm database folder, pick the "brainstorm_db" you have just created.
Follow all the 12+3 introduction tutorials: Tutorials
Updates
The automatic updates do not work with the stand-alone versions, follow this procedure:
- Delete the brainstorm3 folder (don't worry, it will not delete your database)
- Download the latest release of the Brainstorm version
- Follow the installation instructions (see above)