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| = Hyderabad, India: Monday, April 07th, 2025 = <<HTML(<img align="right" alt="BreckenridgeConference" class="attachment" src="/brainstorm/WorkshopBreckenridge2025?action=AttachFile&do=get&target=Breckenridge_logo.png" title="Breckenridge_logo.png" style="width: 50%;">)>> |
= Hyderabad, India: Monday, April 06th, 2025 = <<HTML(<img align="right" alt="LA2024_logo" class="attachment" src="/brainstorm/WorkshopHyderabad2025?action=AttachFile&do=get&target=icassp2025.png" title="icassp2025.png" style="width: 50%;">)>> |
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| Brainstorm lecture and demon on EEG and MEG as part of the International Conference on [[https://www.aiepilepsy-neuro.com/|Artificial Intelligence in Epilepsy and Neurological Disorders in Breckenridge]]. This session will be hands-on Brainstorm features for sEEG analysis. | Brainstorm Lecture and Demo on EEG and MEG: As part of the Mapping Brain-Body-Behavior Signal Dynamics in Human Speech Production and Interaction [[https://sites.google.com/view/wmbspi/|(WMB&SPI)]] a Satellite Workshop of the 2025 IEEE International Conference on Acoustics, Speech, and Signal Processing [[https://2025.ieeeicassp.org/|(ICASSP 2025)]]. |
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| Participants will learn how to use Brainstorm and access its new tools on their personal laptops. | Participants will receive an overview of the Brainstorm software and participate in a short demo on EEG/MEG analysis, with the opportunity to replicate the demo on their own laptops. |
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| <<HTML(<TR><TD>)>>'''Where'''<<HTML(</TD><TD>)>> Breckenridge<<HTML(</TD></TR>)>> | <<HTML(<TR><TD>)>>'''Where'''<<HTML(</TD><TD>)>> Hyderabad, India <<HTML(</TD></TR>)>> |
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| <<HTML(<TR><TD>)>>'''When'''<<HTML(</TD><TD>)>>March 3rd, 2025, 8:30-17:45<<HTML(</TD></TR>)>> | <<HTML(<TR><TD>)>>'''When'''<<HTML(</TD><TD>)>>April 6th, 2025<<HTML(</TD></TR>)>> |
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| <<HTML(<TR><TD>)>>'''Registration'''<<HTML(</TD><TD>)>> [[https://www.aiepilepsy-neuro.com/register.aspx?e=1658&culture=en-US|Please visit this page]]. <<HTML(</TD></TR>)>> | <<HTML(<TR><TD>)>>'''Registration'''<<HTML(</TD><TD>)>> [[https://sites.google.com/view/wmbspi/|Registration will open on Jan 13th]] <<HTML(</TD></TR>)>> |
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| <<HTML(<TR><TD>)>>'''Organizers'''<<HTML(</TD><TD>)>>''' '''[[https://www.aiepilepsy-neuro.com/|AI EPILEPSY 2025]] <<BR>> <<HTML(</TD></TR>)>> | <<HTML(<TR><TD>)>>'''Submit abstract for WMB&SPI'''<<HTML(</TD><TD>)>> [[https://cmt3.research.microsoft.com/ICASSP2025/Track/27/Submission/Create|Submit abstract]] [submission is still open] <<HTML(</TD></TR>)>> |
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| <<HTML(<TR><TD>)>>'''Instructors'''<<HTML(</TD><TD>)>> [[https://neuroimage.usc.edu/brainstorm/AboutUs/JohnMosher|John Mosher]], [[https://neuroimage.usc.edu/brainstorm/AboutUs/tmedani|Takfarinas Medani]], [[https://www.linkedin.com/in/yash-vakilna/|Yash Vakilna]], [[https://www.linkedin.com/in/johnson-hampson/|Johnson Hampson]] and [[https://neuroimage.usc.edu/brainstorm/AboutUs/ChinmayChinara|Chinmay Chinara]] <<BR>> (UTH/USC USA, McGill Canada )<<HTML(</TD></TR>)>> | === Workshop abstract submission/registration === If you have any questions about the workshop or need to submit an abstract, please feel free to contact Dr. Medani ( medani@usc.edu ) or Dr. Kadiri ( skadiri@usc.edu ). |
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| <<HTML(<TR><TD>)>>'''Audience'''<<HTML(</TD><TD>)>>Users interested in analyzing sEEG recordings using Brainstorm.<<BR>>Some experience with iEEG and signal processing is recommended. Teaching in English.<<BR>>Number of participants: XX <<HTML(</TD></TR>)>> | <<HTML(<TR><TD>)>>'''Organizers'''<<HTML(</TD><TD>)>>''' '''[[https://sites.google.com/view/wmbspi/team|WMB&SPI2025 team]] <<BR>> <<HTML(</TD></TR>)>> |
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| <<HTML(<TR><TD>)>>'''Slides'''<<HTML(</TD><TD>)>> Intro slides | [[https://neuroimage.usc.edu/resources/bst_workshop/2025_colorado/Walkthrough_BST_Workshop_Colorado_v0.pdf|Walkthrough]] | [[https://docs.google.com/forms/d/e/1FAIpQLSfLM_V2LISKa-ZPKUqrh6s4ezWFbpnUIBuLyIC1Tehw7GjZdw/viewform?usp=sf_link|Survey]]<<HTML(</TD></TR>)>> | <<HTML(<TR><TD>)>>'''Instructors'''<<HTML(</TD><TD>)>> [[https://neuroimage.usc.edu/brainstorm/AboutUs/tmedani|Takfarinas Medani]] <<HTML(</TD></TR>)>> <<HTML(<TR><TD>)>>'''Audience'''<<HTML(</TD><TD>)>>Users interested in analyzing EEG/MEG recordings using Brainstorm.<<BR>>Teaching in English.<<BR>>Number of participants: XX <<HTML(</TD></TR>)>> <<HTML(<TR><TD>)>>'''Slides'''<<HTML(</TD><TD>)>> Intro slides | Walkthrough | Survey<<HTML(</TD></TR>)>> |
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| In this workshop, we will be working on a SEEG dataset recorded at the Epilepsy Monitoring Unit at UTHealth Houston. | Under preparation |
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| The data is distributed as '''raw''' and '''pre-processed''' data. 1. '''raw data''' is located in the file '''`WorkshopColorado_raw.zip`''' which contains raw SEEG recordings (in EDF format), T1 MRI and CT scan (both in NIfTI format). The raw SEEG recordings correspond to: a. Two files containing seizure onset: i. Seizure onset with Low-voltage-fast-activity i. Seizure with Ictal repetitive spiking a. One file with interictal spike, and a. One file containing baseline recordings 1. '''pre-processed data''' is located in the file '''`workshopColorado_precomputed.zip`''', which contains a Brainstorm protocol with the raw data already pre-processed. Once you have successfully installed and tested Brainstorm (see previous section), proceed to download the data to be used in the workshop. 1. Download the '''raw data''': . [[https://neuroimage.usc.edu/resources/bst_workshop/2025_colorado/Data/workshopColorado_raw.zip|workshopColorado_raw.zip]] 1. Unzip the downloaded raw data on your desktop: it will create a new folder named '''`workshopColorado_raw`''' 1. Download the '''pre-processed data'''. Do not unzip this file: . [[https://neuroimage.usc.edu/resources/bst_workshop/2025_colorado/Data/workshopColorado_precomputed.zip|workshopColorado_precomputed.zip]] 1. Final check: after following the steps above, you should have 3 folders on your desktop: * '''`brainstorm3`''': the software folder, containing the source code and the compiled executable * '''`brainstorm_db`''': your Brainstorm database (which should be empty for now) * '''`workshopColorado_raw.zip`''': Raw data, for SEEG localization demonstration * '''`workshopColorado_precomputed.zip`''': Pre-processed Brainstorm protocol for workshop session == Program == === Monday, March 3, 2025 === |
== Program (tentatively) == === Sunday, April 6, 2025 === |
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| <<HTML(<TR><TD>)>> 08:30-08:55 <<HTML(</TD><TD>)>> | <<HTML(<TR><TD>)>> 09:30-09:35 <<HTML(</TD><TD>)>> |
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| <<HTML(<TR><TD>)>>08:55-09:00<<HTML(</TD><TD>)>> | <<HTML(<TR><TD>)>>09:35-10:20<<HTML(</TD><TD>)>> |
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| '''Introduction to the Workshop - '''Richard Leahy, USC, USA<<HTML(</TD></TR>)>> | Keynote 1: Shantala Hegde''' '''<<HTML(</TD></TR>)>> |
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| <<HTML(<TR><TD>)>>09:00-09:30<<HTML(</TD><TD>)>> | <<HTML(<TR><TD>)>>10:20-11:05<<HTML(</TD><TD>)>> |
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| '''[[https://neuroimage.usc.edu/resources/bst_workshop/2024_parkcityutah/Slides/JohnMosher_slides.pdf|BioPhysics of SEEG]] - '''John Mosher, UTH, USA<<HTML(</TD></TR>)>> | Keynote 2: Shalini Narayana''' '''<<HTML(</TD></TR>)>> |
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| <<HTML(<TR><TD>)>>09:30-10:00<<HTML(</TD><TD>)>> | <<HTML(<TR><TD>)>>11:05-11:30<<HTML(</TD><TD>)>> |
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| '''[[https://neuroimage.usc.edu/resources/bst_workshop/2024_parkcityutah/Slides/SylvainBaillet_slides.pdf|Brainstorm Overview]] '''- Takfarinas Medani, USC, USA<<HTML(</TD></TR>)>> | '''Coffee Break'''<<HTML(</TD></TR>)>> |
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| <<HTML(<TR><TD>)>>10:00-10:15<<HTML(</TD><TD>)>> | <<HTML(<TR><TD>)>>11:30-1:00<<HTML(</TD><TD>)>> |
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| '''Coffee Break<<BR>>'''Onsite assistance in installing the material for the training session<<HTML(</TD></TR>)>> <<HTML(<TR><TD>)>>10:15-11:00<<HTML(</TD><TD>)>> '''Tutorial – Hands-On Brainstorm 1/4 - ''' Y.Vakilna, C.Chinara, J.Hampson & T.Medani ''' Introduction to Brainstorm Interface: Anatomy Data ''' Database explorer MRI volumes, surfaces Anatomical parcellations CT volumes Coregistration: pre- / post-implantation images <<HTML(</TD></TR>)>> <<HTML(<TR><TD>)>>11:00-12:15<<HTML(</TD><TD>)>> '''Tutorial – Hands-On Brainstorm 2/4 - ''' Y.Vakilna, C.Chinara, J.Hampson & T.Medani ''' Introduction to Brainstorm Interface: sEEG Functional Data. ''' Manual marking of SEEG contacts on post-implantation image Automatic marking of SEEG contacts on post-implantation image Automatic anatomical labeling of SEEG contacts Reviewing continuous SEEG recordings Montages and management of event markers <<HTML(<TR><TD>)>>12:15-13:00<<HTML(</TD><TD>)>> |
'''Brainstorm Lecture and Demo <<BR>>'''<<HTML(<TR><TD>)>>1:00-2:00<<HTML(</TD><TD>)>> |
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| <<HTML(<TR><TD>)>>13:00-15:00<<HTML(</TD><TD>)>> '''Tutorial – Hands-On Brainstorm 3/4 - ''' Y.Vakilna, C.Chinara, J.Hampson & T.Medani | <<HTML(<TR><TD>)>>2:00-2:45<<HTML(</TD><TD>)>> Keynote 3: Tanja Schultz <<HTML(<TR><TD>)>>2:45-3:30<<HTML(</TD><TD>)>> Poster Blitz Presentation <<HTML(<TR><TD>)>>3:30-4:00<<HTML(</TD><TD>)>> |
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| '''SEEG: Analysis''' | '''Coffee Break and '''Poster Presentation |
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| ==>Import precomputed Brainstorm protocol<== | <<HTML(<TR><TD>)>>4:00-4:45<<HTML(</TD><TD>)>> |
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| sEEG Montage Configuration | Keynote 4: Adolfo M. Garcia |
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| sEEG Frequency Analysis and Filtering | <<HTML(<TR><TD>)>>4:45-5:30<<HTML(</TD><TD>)>> |
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| Compute Forward Model (aka the Head or Lead Field Model) Compute Noise Covariance Matrix Compute Inverse Model View Source Results Atlases and Scouts <<HTML(<TR><TD>)>>15:00-15:15<<HTML(</TD><TD>)>> '''Coffee Break'''<<HTML(</TD></TR>)>> <<HTML(<TR><TD>)>>15:15-17:30<<HTML(</TD><TD>)>> '''Tutorial – Hands-On Brainstorm 4/4 - '''Y.Vakilna, C.Chinara, J.Hampson & T.Medani '''SEEG: Advanced Analysis''' Modeling interictal spikes Modeling ictal wave within the seizure window Modeling ictal onset with LVFA in the Sensor Space Modeling ictal onset with LVFA in the Source Space Modeling ictal onset with repetitive spiking at Sensor and Source spaces <<HTML(</TD></TR>)>> <<HTML(<TR><TD>)>>17:30<<HTML(</TD><TD>)>> End of the workshop, main conference begins at 6pm |
Panel Discussion and Closing Notes |
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| We will provide a [[https://neuroimage.usc.edu/resources/bst_workshop/2025_colorado/Walkthrough_BST_Workshop_Colorado_v0.pdf|detailed step-by-step walkthrough]] of the data analyses performed at the training. In addition, results obtained in this workshop can be replicated with ''' this script (to be updated)'''. | We will provide a detailed step-by-step walkthrough of the data analyses performed at the training. In addition, results obtained in this workshop can be replicated with ''' this script (to be updated)'''. |
Hyderabad, India: Monday, April 06th, 2025
Brainstorm Lecture and Demo on EEG and MEG: As part of the Mapping Brain-Body-Behavior Signal Dynamics in Human Speech Production and Interaction (WMB&SPI) a Satellite Workshop of the 2025 IEEE International Conference on Acoustics, Speech, and Signal Processing (ICASSP 2025).
Participants will receive an overview of the Brainstorm software and participate in a short demo on EEG/MEG analysis, with the opportunity to replicate the demo on their own laptops.
General information
| Where | Hyderabad, India |
| When | April 6th, 2025 |
| Registration | Registration will open on Jan 13th |
| Submit abstract for WMB&SPI | Submit abstract [submission is still open] |
| Organizers | WMB&SPI2025 team |
| Instructors | Takfarinas Medani |
| Audience | Users interested in analyzing EEG/MEG recordings using Brainstorm. Teaching in English. Number of participants: XX |
| Slides | Intro slides | Walkthrough | Survey |
Requirements
In order to make the workshop as efficient as possible, we ask all the attendees to: download, install and test the software and download the workshop dataset on their laptops prior to the workshop.
We highly recommend bringing an external mouse on the day of the workshop. Most of the manipulations are done with the mouse, and some involve an intense use of the scrolling operation.
Installing Brainstorm
Please read carefully the following instructions on:
preparing your laptop for the training
Workshop dataset
Under preparation
Program (tentatively)
Sunday, April 6, 2025
| 09:30-09:35 | Registration & Check in |
| 09:35-10:20 | Keynote 1: Shantala Hegde |
| 10:20-11:05 | Keynote 2: Shalini Narayana |
| 11:05-11:30 | Coffee Break |
| 11:30-1:00 | Brainstorm Lecture and Demo |
| 1:00-2:00 | Lunch Break |
| 2:00-2:45 | Keynote 3: Tanja Schultz |
| 2:45-3:30 | Poster Blitz Presentation |
| 3:30-4:00 | Coffee Break and Poster Presentation |
| 4:00-4:45 | Keynote 4: Adolfo M. Garcia |
| 4:45-5:30 | Panel Discussion and Closing Notes |
We will provide a detailed step-by-step walkthrough of the data analyses performed at the training. In addition, results obtained in this workshop can be replicated with this script (to be updated).
Bring your own data
At the end of the session, the Brainstorm team will dedicate their time to address participants' requests. We encourage you to bring in your own sample of data that you would be interested in processing with Brainstorm.
The file formats that can be read by Brainstorm are listed on the Introduction page. Please contact us in advance if you are not sure your dataset can be imported in Brainstorm. If you do not have data available, you may continue to use the tutorial dataset used in the present workshop.
Troubleshooting
For any technical problem, please contact Takfarinas Medani ( medani@usc.edu )