|
⇤ ← Revision 1 as of 2024-07-14 06:00:55
Size: 5035
Comment:
|
Size: 5375
Comment:
|
| Deletions are marked like this. | Additions are marked like this. |
| Line 1: | Line 1: |
| = Los Angeles, CA, USA: October 18th, 2023 = | = Los Angeles, CA, USA: December 5th, 2024 = |
| Line 4: | Line 4: |
| Half-day workshop, as part of the [[https://cuttinggardens2023.org/|CuttingGardens2023 conference]]. <<BR>> This session will be an introduction to Brainstorm for EEG analysis. Participants will learn how to use Brainstorm and access its new tools on their personal laptops. The link to the video will be uploaded soon. | Full-day workshop, prior of the [[https://aesnet.org/AES-annual-meeting|AES2023 Meeting]]. <<BR>> This session will be an introduction to Brainstorm for iEEG analysis. Participants will learn how to use Brainstorm and access its new tools on their personal laptops. |
| Line 11: | Line 11: |
| <<HTML(<TR><TD>)>>'''When'''<<HTML(</TD><TD>)>>Wednesday October 18th, 2023: 13:00-17:30<<HTML(</TD></TR>)>> | <<HTML(<TR><TD>)>>'''When'''<<HTML(</TD><TD>)>>Thursdya December 5th, 2024: 8:30-17:30<<HTML(</TD></TR>)>> |
| Line 13: | Line 13: |
| <<HTML(<TR><TD>)>>'''Instructor'''<<HTML(</TD><TD>)>>[[https://neuroimage.usc.edu/brainstorm/AboutUs/RaymundoCassani|Raymundo Cassani]] & [[https://neuroimage.usc.edu/brainstorm/AboutUs/tmedani#preview|Takfarinas Medani]]<<HTML(</TD></TR>)>> | <<HTML(<TR><TD>)>>'''Instructor'''<<HTML(</TD><TD>)>>Brainstrom team<<HTML(</TD></TR>)>> |
| Line 15: | Line 15: |
| <<HTML(<!--<TR><TD>)>>'''Registration'''<<HTML(</TD><TD>)>> [[https://cuttinggardens2023.org/gardens/los-angeles/#registration|Please visit this page]]. <<HTML(</TD></TR>-->)>> | <<HTML(<!--<TR><TD>)>>'''Registration'''<<HTML(</TD><TD>)>> [[https://cuttinggardens2023.org/gardens/los-angeles/#registration|T]]BD. <<HTML(</TD></TR>-->)>> |
| Line 17: | Line 17: |
| <<HTML(<TR><TD>)>>'''Audience'''''' '''<<HTML(</TD><TD>)>>Users interested in analyzing EEG/MEG recordings using Brainstorm.<<BR>>Teaching in English. <<HTML(</TD></TR>)>> | <<HTML(<TR><TD>)>>'''Audience'''''' '''<<HTML(</TD><TD>)>>Users interested in analyzing iEEG recordings using Brainstorm.<<BR>>Teaching in English. <<HTML(</TD></TR>)>> |
| Line 28: | Line 28: |
| The workshop dataset is a pre-processed version of the dataset in used in the [[Tutorials/Yokogawa|Brainstorm tutorial on median nerve stimulation]]. It consists of simultaneous EEG and MEG recordings during a median nerve stimulation experiment (right arm). A full description of the dataset can be found [[Tutorials/Yokogawa#Description_of_the_experiment|here]]. | In this workshop, we will be working on a SEEG dataset recorded at the Epilepsy Monitoring Unit at UTHealth Houston. |
| Line 30: | Line 30: |
| Once you have successfully installed and tested Brainstorm (see previous section), proceed to download the dataset for the workshop. | The data is distributed as '''raw''' and '''pre-processed''' data. |
| Line 32: | Line 32: |
| 1. Download the tutorial dataset (360 MB): . https://box.bic.mni.mcgill.ca/s/hKO5zc2W4uDE3Zk 1. Unzip the downloaded file on your desktop: it will create a new folder named '''`workshop_lax`''' |
1. '''raw data''' is located in the file '''`WorkshopXXX_raw.zip`''' which contains raw SEEG recordings (in EDF format), T1 MRI and CT scan (both in NIfTI format). The raw SEEG recordings correspond to: a. Two files containing seizure onset: i. Seizure onset with Low-voltage-fast-activity i. Seizure with Ictal repetitive spiking a. One file with interictal spike, and a. One file containing baseline recordings 1. '''pre-processed data''' is located in the file '''`WorkshopXXX_precomputed.zip`''', which contains a Brainstorm protocol with the raw data already pre-processed. Once you have successfully installed and tested Brainstorm (see previous section), proceed to download the data to be used in the workshop. 1. Download the '''raw data''': . TBD 1. Unzip the downloaded raw data on your desktop: it will create a new folder named '''`workshopUTAH_raw`''' 1. Download the '''pre-processed data'''. Do not unzip this file: . TBD |
| Line 38: | Line 53: |
| * '''`workshop_lax`''': Dataset used during the workshop session | * '''`workshopXXX_raw`''': Raw data, for SEEG localization demonstration * '''`WorkshopXXX_precomputed.zip`''': Pre-processed Brainstorm protocol for workshop session |
Los Angeles, CA, USA: December 5th, 2024
Full-day workshop, prior of the AES2023 Meeting.
This session will be an introduction to Brainstorm for iEEG analysis. Participants will learn how to use Brainstorm and access its new tools on their personal laptops.
General information
| Where | University of Southern California |
| When | Thursdya December 5th, 2024: 8:30-17:30 |
| Instructor | Brainstrom team |
| Audience | Users interested in analyzing iEEG recordings using Brainstorm. Teaching in English. |
| Documents | Introduction slides | Walkthrough | Survey |
Requirements
In order to make the workshop as efficient as possible, we ask all the attendees to: download, install and test the software and download the workshop dataset on their laptops prior to the workshop.
Installing Brainstorm
Please read carefully the following instructions on:
preparing your laptop for the training
Workshop dataset
In this workshop, we will be working on a SEEG dataset recorded at the Epilepsy Monitoring Unit at UTHealth Houston.
The data is distributed as raw and pre-processed data.
raw data is located in the file WorkshopXXX_raw.zip which contains raw SEEG recordings (in EDF format), T1 MRI and CT scan (both in NIfTI format). The raw SEEG recordings correspond to:
- Two files containing seizure onset:
- Seizure onset with Low-voltage-fast-activity
- Seizure with Ictal repetitive spiking
- One file with interictal spike, and
- One file containing baseline recordings
- Two files containing seizure onset:
pre-processed data is located in the file WorkshopXXX_precomputed.zip, which contains a Brainstorm protocol with the raw data already pre-processed.
Once you have successfully installed and tested Brainstorm (see previous section), proceed to download the data to be used in the workshop.
Download the raw data:
- TBD
Unzip the downloaded raw data on your desktop: it will create a new folder named workshopUTAH_raw
Download the pre-processed data. Do not unzip this file:
- TBD
- Final check: after following the steps above, you should have 3 folders on your desktop:
brainstorm3: the software folder, containing the source code and the compiled executable
brainstorm_db: your Brainstorm database (which should be empty for now)
workshopXXX_raw: Raw data, for SEEG localization demonstration
WorkshopXXX_precomputed.zip: Pre-processed Brainstorm protocol for workshop session
Program
| 12:30-13:00 | Onsite assistance in installing the material for the training session |
| 13:00-13:30 | Introduction to Brainstorm (lecture) |
| 13:30-14:35 | Loading anatomy and recordings Set anatomy Review RAW recordings Import events |
| 14:35-15:35 | Pre-processing Frequency filters Artifact detection Artifact correction with SSP |
| 15:35-15:50 | Coffee break |
| 15:50-16:20 | Analysis sensor level Import recordings Review trials Trial averages |
| 16:20-16:55 | Source estimation Forward model (aka Head model) Noise covariance matrix Source estimation (from EEG and MEG recordings) |
| 16:55-17:15 | Analysis source level Cortex parcellations: Atlases and Scouts |
We provide a detailed step-by-step walkthrough of the data analyses performed at the training. In addition, results obtained in this workshop can be replicated with this script.
Troubleshooting
For any technical problem, please contact Raymundo Cassani ( raymundo.cassani@mcgill.ca )