Differences between revisions 3 and 13 (spanning 10 versions)

Montreal, Canada: August 19-20, 2021

Virtual Brainstorm training session.
Introduction to MEG analysis with Brainstorm, part of IPN Summer School at McGill University.

General information

Where	Zoom.
When	Thursday, August 19th 2021: 9:30-17:00 Friday, August 20th 2021: 9:30-16:00
Instructors	Raymundo Cassani (Montreal Neurological Institute / McGill, Canada) Marc Lalancette (Montreal Neurological Institute / McGill, Canada)
Audience	Users interested in analyzing MEG/EEG/sEEG recordings using Brainstorm. Some experience with MEG/EEG is recommended. Teaching in English. Number of participants: XX
Slides	Introduction \| Walkthrough

Requirements

In order to make the session as efficient as possible, we ask all the attendees to download, install and test the software and sample dataset on their laptops prior to the workshop.

Please read carefully the following instructions:
How to prepare your laptop for the training

Program:

DAY 1

9:45-10:00	Overview of the MEG program at The Neuro by Marc Lalancette
10:00-11:00	Brainstorm overview Software structure, typical data workflow
11:00-11:10	Coffee break
11:10-12:30	Hands-on training Database explorer MRI volumes, surfaces and anatomical atlases Registration MEG/MRI Review of continuous MEG recordings
12:30-14:00	Lunch
14:00-17:00	Hands-on training Frequency filters Artifact detection Artifact correction with SSP Correction of stimulation delays Averaging, exploring the evoked response

DAY 2

9:30-12:00	Hands-on training Head modeling, cortical source reconstruction Regions of interest (ROIs) Time-frequency analysis Functional connectivity Advanced scripting interface
12:00-12:30	Questions
12:30-14:00	Lunch
14:00-16:00	Processing own data

We provide a detailed step-by-step walkthrough of the data analyses performed at the training.

-  ⇤ ← Revision 3 as of 2021-08-14 21:04:00 → 
  Size: 3539
  Editor: RaymundoCassani
  Comment:
+   ← Revision 13 as of 2021-08-24 18:50:32 → ⇥
  Size: 3365
  Editor: RaymundoCassani
  Comment:
-Deletions are marked like this.
+Additions are marked like this.
 Line 4:
-Virtual Brainstorm training session, MEG-oriented.
+Virtual Brainstorm training session. <<BR>> Introduction to MEG analysis with Brainstorm, part of IPN Summer School at McGill University.
 Line 11:
-<<HTML(<TR><TD>)>>'''When'''<<HTML(</TD><TD>)>>Thursday, April 26th 2018: 9:30-18:00<<HTML(</TD></TR>)>>
+<<HTML(<TR><TD>)>>'''When'''<<HTML(</TD><TD>)>>Thursday, August 19th 2021: 9:30-17:00<<BR>>Friday, August 20th 2021: 9:30-16:00<<HTML(</TD></TR>)>>
 Line 13:
-<<HTML(<TR><TD>)>>'''Instructors'''<<HTML(</TD><TD>)>>[[http://neuroimage.usc.edu/brainstorm/AboutUs/MartinCousineau|Martin Cousineau]], [[http://neuroimage.usc.edu/brainstorm/AboutUs/ElizabethBock|Elizabeth Bock]], [[AboutUs/SylvainBaillet|Sylvain Baillet]] (Montreal Neurological Institute / McGill)<<HTML(</TD></TR>)>>
+<<HTML(<TR><TD>)>>'''Instructors'''<<HTML(</TD><TD>)>>[[AboutUs/RaymundoCassani|Raymundo Cassani]] (Montreal Neurological Institute / McGill, Canada)<<BR>>[[AboutUs|Marc Lalancette]] (Montreal Neurological Institute / McGill, Canada)<<HTML(</TD></TR>)>>
 Line 15:
-<<HTML(<TR><TD>)>>'''Audience'''<<HTML(</TD><TD>)>>Users interested in analyzing MEG/EEG/sEEG recordings using Brainstorm.<<BR>>Some experience with MEG/EEG is recommended. Teaching in English.<<BR>>Number of participants: 50 <<HTML(</TD></TR>)>>
+<<HTML(<TR><TD>)>>'''Audience'''<<HTML(</TD><TD>)>>Users interested in analyzing MEG/EEG/sEEG recordings using Brainstorm.<<BR>>Some experience with MEG/EEG is recommended. Teaching in English.<<BR>>Number of participants: XX <<HTML(</TD></TR>)>>
 Line 17:
-<<HTML(<TR><TD>)>>'''Fees'''<<HTML(</TD><TD>)>>100 CAD (students) / 150 CAD (staff and faculty) [[attachment:Brainstorm_Spring2018_Payment_Instr.pdf|Payment Instructions]]<<HTML(</TD></TR>)>>

<<HTML(<TR><TD>)>>'''Slides'''<<HTML(</TD><TD>)>> [[https://www.mcgill.ca/bic/files/bic/megatmcgill.pdf|MEG@McGill]] | [[https://www.mcgill.ca/bic/files/bic/brainstorm_intro_montreal2018.pdf|Introduction]] | [[https://www.mcgill.ca/bic/files/bic/montreal2018_walkthrough.pdf|Walkthrough]] <<HTML(</TD></TR>)>>
+<<HTML(<TR><TD>)>>'''Slides'''<<HTML(</TD><TD>)>> [[https://box.bic.mni.mcgill.ca/s/SNLoMkvweeqgU6R|Introduction]] | [[https://box.bic.mni.mcgill.ca/s/439b5NxpwfNiBjr|Walkthrough]] <<HTML(</TD></TR>)>>
-Line 24:
+Line 22:
-The participants are required to <<HTML(<FONT color=red>)>> '''bring a laptop''' <<HTML(</FONT>)>>  (an external mouse will add to your comfort). In order to make the  session as efficient as possible, we ask all the attendees to <<HTML(<FONT color=red>)>>'''download, install and test'''<<HTML(</FONT>)>> the software and sample dataset on their laptops prior to the workshop.
+In order to make the  session as efficient as possible, we ask all the attendees to <<HTML(<FONT color=red>)>>'''download, install and test'''<<HTML(</FONT>)>> the software and sample dataset on their laptops prior to the workshop.
-Line 29:
+Line 27:
+'''DAY 1 '''
 Line 31:
-<<HTML(<TR><TD>)>>9:30-9:45<<HTML(</TD><TD>)>>Overview of the MEG program at the MNI by Elizabeth Bock<<HTML(</TD></TR>)>>
+<<HTML(<TR><TD>)>>9:45-10:00<<HTML(</TD><TD>)>>Overview of the MEG program at The Neuro by Marc Lalancette<<HTML(</TD></TR>)>>
 Line 33:
-<<HTML(<TR><TD>)>>9:45-10:45<<HTML(</TD><TD>)>>'''Brainstorm overview'''
+<<HTML(<TR><TD>)>>10:00-11:00<<HTML(</TD><TD>)>>'''Brainstorm overview'''
 Line 37:
-<<HTML(<TR><TD>)>>10:45-11:00<<HTML(</TD><TD>)>>''Coffee break''<<HTML(</TD></TR>)>>
+<<HTML(<TR><TD>)>>11:00-11:10<<HTML(</TD><TD>)>>''Coffee break''<<HTML(</TD></TR>)>>
 Line 39:
-<<HTML(<TR><TD>)>>11:00-12:00<<HTML(</TD><TD>)>>'''Hands-on training'''
+<<HTML(<TR><TD>)>>11:10-12:30<<HTML(</TD><TD>)>>'''Hands-on training'''
 Line 49:
-<<HTML(<TR><TD>)>>12:00-13:00<<HTML(</TD><TD>)>>''Lunch''<<HTML(</TD></TR>)>>
+<<HTML(<TR><TD>)>>12:30-14:00<<HTML(</TD><TD>)>>''Lunch''<<HTML(</TD></TR>)>>
 Line 51:
-<<HTML(<TR><TD>)>>13:00-15:00<<HTML(</TD><TD>)>>'''Hands-on training'''
+<<HTML(<TR><TD>)>>14:00-17:00<<HTML(</TD><TD>)>>'''Hands-on training'''
 Line 59:
-Averaging, exploring the evoked response
+Correction of stimulation delays

Averaging, exploring the evoked response <<HTML(</TD></TR>)>>

<<HTML(</TABLE>)>>

'''DAY 2 '''

<<HTML(<TABLE>)>>

<<HTML(<TR><TD>)>>9:30-12:00<<HTML(</TD><TD>)>>'''Hands-on training'''
-Line 63:
+Line 73:
-Regions of interest (ROIs)<<HTML(</TD></TR>)>>

<<HTML(<TR><TD>)>>15:00-15:30<<HTML(</TD><TD>)>>''Coffee break''<<HTML(</TD></TR>)>>

<<HTML(<TR><TD>)>>15:30-17:30<<HTML(</TD><TD>)>>'''Hands-on training'''
+Regions of interest (ROIs)
-Line 75:
+Line 81:
-<<HTML(<TR><TD>)>>17:30-18:00<<HTML(</TD><TD>)>>'''Questions'''<<HTML(</TD></TR>)>>
+<<HTML(<TR><TD>)>>12:00-12:30<<HTML(</TD><TD>)>>'''Questions'''<<HTML(</TD></TR>)>>

<<HTML(<TR><TD>)>>12:30-14:00<<HTML(</TD><TD>)>>''Lunch''<<HTML(</TD></TR>)>>

<<HTML(<TR><TD>)>>14:00-16:00<<HTML(</TD><TD>)>>'''Processing own data'''<<HTML(</TD></TR>)>>
-Line 81:
+Line 91:
-We provide [[https://www.mcgill.ca/bic/files/bic/montreal2018_walkthrough.pdf|a detailed step-by-step walkthrough]] of the data analyses performed at the training.
+We provide [[https://www.dropbox.com/s/ykg9b6z2n45q01o/2021_ipn_walkthrough.pdf?dl=0|a detailed step-by-step walkthrough]] of the data analyses performed at the training.