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= Brainstorm Training: Montreal, December 6, 2012 = | |
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'''Where:''' TBA | '''Where:''' McGill University - [[http://www.mcgill.ca/maps/strathcona-anatomy-and-dentistry-building|Strathcona Anatomy & Densitry Building]], room 1-12, 3rd floor from 3640 University St. ([[http://www.mcgill.ca/maps/strathcona-anatomy-and-dentistry-building|Map]]). Access is through side door pictured below: last building on the left of University Street before the des Pins intersection. |
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'''Motivation:''' Academic software applications for MEG and EEG data analysis have grown considerably over the past decade, reaching to an increasing number of users and achieving higher degrees of sophistication (Baillet et al., 2011). Brainstorm is a software project that is entering its second decade of development and distribution, with an open-source and free-of-charge policy. More than 6,000 users have downloaded Brainstorm's code or executable packages (which do not require a Matlab license), and 500 registered active users access the software updates on a regular basis. Brainstorm's user community is growing rapidly and features a great variety of research areas in MEG and EEG. We believe Brainstorm is serving well its users, in terms of facility and convenience of utilization and improvements in productivity and reproducibility of their research output. More than 90 journal articles feature results obtained using Brainstorm. The software is now featuring new elements for scripting large batches of data workflows (automated analysis pipelines, group analyses, etc.) and users can plug in their own processes for data analysis. As the user community is growing in size and diversity, we wish to feature some of the most exciting and cutting-edge usage of the software and communicate the essential elements of the application to other researchers.''' ''' | {{attachment:brainstorm_wrkshp.jpg||width="300"}} |
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'''About this Symposium & Training Clinic: '''This''' '''Biomag Satellite Symposium will feature both oral communications from Brainstorm users and a full hands-on training course. Participants need to bring their own laptops to practice with Brainstorm. The benefit is that they will be able to reproduce the steps taken during the training, when back to their home institution. We anticipate it will be a unique opportunity for the Biomag community to provide feedback on the software, to help its developers improve and provide new features, and to carry in-depth insight about current and future developments to new users. | Enter through the door on University St and climb up two floors. Make a right at the top of the stairs: Room 1/12 is to your right in the hallway. Signs will be posted to guide you through the building. |
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'''Cited reference''':'' Baillet, S.; Friston, K. & Oostenveld, R. (2011) [[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3148593/|Academic software applications for electromagnetic brain mapping using MEG and EEG]]. Comput Intell Neurosci, 972050'' | '''When:''' Thursday, December 6, 8am-6pm |
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'''Instructors:''' Sylvain Baillet, Beth Bock, Esther Florin & Francois Tadel (MNI, !McGill), John Mosher (Cleveland Clinic) | '''Instructors:''' Francois Tadel, Sylvain Baillet, Elizabeth Bock ([[http://www.bic.mni.mcgill.ca/Facilities/MEG|MNI, McGill]]) |
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'''Target audience: '''MEG and EEG users interested in presenting their results using Brainstorm and/or learning about the software basic and more advanced elements. Students, Post-docs, Staff, Faculty interested in learning a new tool for MEG and EEG data analysis and source imaging. | '''Target audience: '''Neuroscientists, psychologists, clinicians, engineers, etc. using MEG or EEG as advanced research tools. Students, Post-docs, Staff, Faculty interested in learning a new academic software tool for MEG and EEG data analysis, with an emphasis on source imaging, spectral decompositions and functional connectivity metrics. |
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'''Participation fees: '''$35 USD (students & post-docs) - $65 USD (faculty & staff): payment in cash at the door. | '''Participation fees:''' $30 (students & post-docs), $60 (faculty and staff) - in cash at the door or by FOAPAL for McGill students/staff (send FOAPAL information at brainstorm@sipi.usc.edu ). |
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<<HTML(<FONT color=red>)>>'''Requirements'''<<HTML(</FONT)>> | <<HTML(<FONT color=red>)>>'''Requirements'''<<HTML(</FONT>)>> |
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The participants are required to bring a laptop. In order to make the afternoon session as efficient as possible, we ask all the attendees to download, install and test the software and sample dataset on their laptops prior to the workshop. Please read carfully the following instructions:<<BR>>[[WorkshopBiomag2012Install|How to prepare your laptop for the training]] | The participants are required to bring a laptop. In order to make the afternoon session as efficient as possible, we ask all the attendees to download, install and test the software and sample dataset on their laptops prior to the workshop. |
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'''8:00-10:00: Introduction''' | Please read carefully the following instructions:<<BR>>[[WorkshopNeuro2012Install|How to prepare your laptop for the training]]<<BR>><<BR>> |
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* '''08-00-09:00:''' '''Laptop clinic''' - Bring your laptop at this clinic if you are not sure you were succesful in installing the material for the training session (detailed information will be sent by email to all participants prior to the meeting) | '''08:00-09:00:''' '''Laptop clinic''' |
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* '''09:00-9:45''': '''Brainstorm overview:''' software architecture, typical data workflow<<BR>>(Francois Tadel, !McGill University) | * Bring your laptop at this clinic if you are not sure you were successful in installing the material for the training session |
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'''9:45-11:15'''''': User symposium:''' Feature presentations of recent research from Brainstorm users. | '''09:00-09:15''': '''Introduction by Sylvain Baillet''' |
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* '''Katia Lehongre''' (Ecole Normale Supérieure, Paris, France)<<BR>>''Altered low-γ sampling in auditory cortex accounts for the three main facets of dyslexia''. * '''Jean-Marc Lina''' (Electrical Engineering Dept, ETS, Montreal, Canada)<<BR>>''Wavelet-based localization of oscillatory and synchronous sources in Brainstorm'' * '''Nicholas Balderston''' (University of Wisconsin, Milwaukee, USA)<<BR>>''Rapid amygdala responses during trace fear conditioning without awareness'' * '''Ghislaine Dehaene''' (CEA-Neurospin, St-Aubin, France)<<BR>>''Studies of infant's cognition with EEG'' * Full abstracts: [[http://neuroimage.usc.edu/brainstorm/BrainstormUserSymposiumParis2012|Click here]] |
'''09:15-10:00''': '''Brainstorm overview''' |
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'''11:15-11:30: Coffee break''' | * Software architecture * Typical data workflow |
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'''11:30-13:00: Hands-on training begins''' | '''10:00-11:00: Hands-on training begins''' |
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* Importing MRI volumes, surfaces and atlases * Introduction to anatomical atlases '''11:00-11:15: Coffee break<<BR>>''' '''11:15-13:50: Hands-on training<<BR>>''' * Co-registration MEG/MRI |
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* Averaging, observation of a typical somatosensory evoked response * Head modeling, cortical source reconstruction |
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* Averaging, observation of a typical somato-sensory evoked response * Head modeling, cortical source reconstruction |
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* Demo of the new functional connectivity tools * Group analysis * Anatomical atlases |
* Functional connectivity * Group analysis and statistics |
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. <<EmbedContent(http://neuroimage.usc.edu/brainstorm3_register/workshop_biomag2012.js)>> . <<HTML(<FONT color=red>)>> . '''By popular demand, we have moved the event to a larger venue: event capacity has been moved up to 140. Register now!''' . <<HTML(</FONT)>> . . <<HTML(<div id="bst_table" style=""><FORM METHOD="post" ACTION="http://neuroimage.usc.edu/brainstorm3_register/workshop_biomag2012.php" name="form" onSubmit="return validateForm(this);"><TABLE><TR><TD align=right>First name * </TD> <TD><INPUT type="text" name="firstname" size=40></TD></TR> <TR><TD align=right>Last name * </TD> <TD><INPUT type="text" name="lastname" size=40></TD></TR> <TR><TD align=right>Title / Occupation * </TD> <TD><INPUT type="text" name="title" size=40></TD></TR> <TR><TD align=right>Institution * </TD> <TD><INPUT type="text" name="institution" size=40></TD></TR> <TR><TD align=right>City * </TD> <TD><INPUT type="text" name="city" size=40></TD></TR> <TR><TD align=right>Email address * </TD> <TD><INPUT type="text" name="email" size=40></TD></TR> <TR><TD align=right>Phone </TD> <TD><INPUT type="text" name="phone" size=40></TD></TR></TABLE> <BR> <BR> <INPUT type="submit" value="Register now!" style="width:200px"> <A HREF="WorkshopBiomag2012Reg">View list of registered participants </A> <BR><BR><BR> </FORM> </div>)>> |
[[WorkshopNeuro2012Reg|View list of registered participants]] |
Brainstorm Training: Montreal, December 6, 2012
General information
Where: McGill University - Strathcona Anatomy & Densitry Building, room 1-12, 3rd floor from 3640 University St. (Map). Access is through side door pictured below: last building on the left of University Street before the des Pins intersection.
Enter through the door on University St and climb up two floors. Make a right at the top of the stairs: Room 1/12 is to your right in the hallway. Signs will be posted to guide you through the building.
When: Thursday, December 6, 8am-6pm
Instructors: Francois Tadel, Sylvain Baillet, Elizabeth Bock (MNI, McGill)
Target audience: Neuroscientists, psychologists, clinicians, engineers, etc. using MEG or EEG as advanced research tools. Students, Post-docs, Staff, Faculty interested in learning a new academic software tool for MEG and EEG data analysis, with an emphasis on source imaging, spectral decompositions and functional connectivity metrics.
Participation fees: $30 (students & post-docs), $60 (faculty and staff) - in cash at the door or by FOAPAL for McGill students/staff (send FOAPAL information at brainstorm@sipi.usc.edu ).
Workshop program
Requirements
The participants are required to bring a laptop. In order to make the afternoon session as efficient as possible, we ask all the attendees to download, install and test the software and sample dataset on their laptops prior to the workshop.
Please read carefully the following instructions:
How to prepare your laptop for the training
08:00-09:00: Laptop clinic
- Bring your laptop at this clinic if you are not sure you were successful in installing the material for the training session
09:00-09:15: Introduction by Sylvain Baillet
09:15-10:00: Brainstorm overview
- Software architecture
- Typical data workflow
10:00-11:00: Hands-on training begins
- Database explorer
- Importing MRI volumes, surfaces and atlases
- Introduction to anatomical atlases
11:00-11:15: Coffee break
11:15-13:50: Hands-on training
- Co-registration MEG/MRI
- Reviewing continuous recordings
- Artifact detection and correction
- Filtering and epoching
- Averaging, observation of a typical somatosensory evoked response
- Head modeling, cortical source reconstruction
13:00-14:00: Lunch break
14:00-18:00: Hands-on training resumes (coffee & refreshments served)
- Definition of ROIs, tracking the processing of the sensory information millisecond by millisecond at the cortex level
- Frequency and time-frequency analysis
- Functional connectivity
- Group analysis and statistics
- Advanced scripting interface
- Other topics can be discussed depending on the audience specific requests