|
Size: 7774
Comment:
|
Size: 6550
Comment:
|
| Deletions are marked like this. | Additions are marked like this. |
| Line 1: | Line 1: |
| = Page not ready = | = !!!Page under construction!!! = |
| Line 3: | Line 3: |
| <<HTML(<img align="right" alt="ParkCityConference" class="attachment" src="/brainstorm/WorkshopArkansas2024?action=AttachFile&do=get&target=park_city_logo.png" title="park_city_logo.png" style="width: 45%;">)>> | <<HTML(<img align="right" alt="ParkCityConference" class="attachment" src="/brainstorm/WorkshopParkCity2024?action=AttachFile&do=get&target=park_city_logo.png" title="park_city_logo.png" style="width: 50%;">)>> |
| Line 5: | Line 5: |
| Full-day lectures and workshop on Brainstorm as part of the International Conference on [[https://www.aiepilepsy-neuro.com/|Artificial Intelligence in Epilepsy and Neurological Disorders in Park City]]. This session will be an introduction to Brainstorm features for sEEG analysis. | |
| Line 6: | Line 7: |
park_city_logo.png Half-day workshop as part of the International Conference on Artificial Intelligence in Epilepsy and Neurological Disorders in Park City https://www.aiepilepsy-neuro.com/. This session will be an introduction to Brainstorm features for sEEG analysis. Participants will learn how to use Brainstorm and access its new tools on their personal laptops. |
Participants will learn how to use Brainstorm and access its new tools on their personal laptops. |
| Line 16: | Line 14: |
| <<HTML(<TR><TD>)>>'''When'''<<HTML(</TD><TD>)>>April 1st, 2024, 9:00-17:00<<HTML(</TD></TR>)>> | <<HTML(<TR><TD>)>>'''When'''<<HTML(</TD><TD>)>>April 1st, 2024, 8:30-17:00<<HTML(</TD></TR>)>> |
| Line 18: | Line 16: |
| <<HTML(<!--<TR><TD>)>>'''Registration'''<<HTML(</TD><TD>)>> [[https://www.aiepilepsy-neuro.com/register.aspx?e=1658&culture=en-US|Please visit this page]]. <<HTML(</TD></TR>-->)>> | <<HTML(<TR><TD>)>>'''Registration'''<<HTML(</TD><TD>)>> [[https://www.aiepilepsy-neuro.com/register.aspx?e=1658&culture=en-US|Please visit this page]]. <<HTML(</TD></TR>)>> |
| Line 24: | Line 22: |
| <<HTML(<TR><TD>)>>'''Audience'''<<HTML(</TD><TD>)>>Users interested in analyzing sEEG/ECOG recordings using Brainstorm.<<BR>>Some experience with signal processig is recommended. Teaching in English.<<BR>>Number of participants: XX <<HTML(</TD></TR>)>> | <<HTML(<TR><TD>)>>'''Audience'''<<HTML(</TD><TD>)>>Users interested in analyzing sEEG/ECOG recordings using Brainstorm.<<BR>>Some experience with iEEG and signal processing is recommended. Teaching in English.<<BR>>Number of participants: XX <<HTML(</TD></TR>)>> |
| Line 26: | Line 24: |
| <<HTML(<!--<TR><TD>)>>'''Slides'''<<HTML(</TD><TD>)>> TBD [[https://box.bic.mni.mcgill.ca/s/XXXXXXXX|Intro slides]] | [[https://box.bic.mni.mcgill.ca/s/XXXXXXXX|Lectures slides]] | [[https://box.bic.mni.mcgill.ca/s/XXXXXXXX|Walkthrough]] | [[https://forms.gle/XXXXXXXX|Survey]]<<HTML(</TD></TR>-->)>> | <<HTML(<TR><TD>)>>'''Slides'''<<HTML(</TD><TD>)>> '''TBD''' [[https://box.bic.mni.mcgill.ca/s/XXXXXXXX|Intro slides]] | [[https://box.bic.mni.mcgill.ca/s/XXXXXXXX|Lectures slides]] | [[https://box.bic.mni.mcgill.ca/s/XXXXXXXX|Walkthrough]] | [[https://forms.gle/XXXXXXXX|Survey]]<<HTML(</TD></TR>)>> |
| Line 38: | Line 36: |
| TBD | '''TBD''' |
| Line 54: | Line 52: |
| <<HTML(<TR><TD>)>>08:30-09:00<<HTML(</TD><TD>)>> Registration <<HTML(</TD></TR>)>> | <<HTML(<TR><TD>)>>09:30-10:00<<HTML(</TD><TD>)>> Registration, check in<<HTML(</TD></TR>)>> |
| Line 56: | Line 54: |
| <<HTML(<TR><TD>)>>09:00-12:00<<HTML(</TD><TD>)>> Lectures <<HTML(</TD></TR>)>> | 10.00 – 10.05 '''Richard Leahy''' Introduction to Workshop 10.05 – 10.25 '''Philippe Ryvlin '''SEEG and the Human Brain Project''' ''' 10.25 – 10.45''' John Mosher''' BioPhysics of SEEG 10.45 – 11.05 '''Manish Shah''' Source Localization on Brainstorm 11.05 – 12.30 '''Jay Gavalla ''' SEEG and Multimodality Clinical Applications in Brainstorm 12.30 – 1.15''' Lunch Break''' <<HTML(<TR><TD>)>>10:00-10:05<<HTML(</TD><TD>)>> R<<HTML(</TD></TR>)>> |
| Line 62: | Line 72: |
| Lecture: Brainstorm overview | Lecture: '''Brainstorm overview''' |
| Line 72: | Line 82: |
| Anatomy | '''Anatomy''' |
| Line 86: | Line 96: |
| SEEG recordings | '''SEEG recordings''' |
| Line 100: | Line 110: |
| Advanced topics - Based on participants' requests | '''Advanced topics - Based on participants' requests''' |
| Line 114: | Line 124: |
| === Day 2 === <<HTML(<TABLE>)>> <<HTML(<TR><TD>)>>08:30-09:00<<HTML(</TD><TD>)>>'''Source modelling''' ''(Lecture S. Baillet)''<<HTML(</TD></TR>)>> <<HTML(<TR><TD>)>>09:00-10:45<<HTML(</TD><TD>)>>'''Sources estimation''' Forward model (aka Head model) Noise covariance matrix Source estimation (surfaces and volume source spaces) Cortex parcellations: Atlases and Scouts <<HTML(</TD></TR>)>> <<HTML(<TR><TD>)>>10:45-12:00<<HTML(</TD><TD>)>>'''Subject level statistics''' Statistics, sensor space Statistics, source space <<HTML(</TD></TR>)>> <<HTML(<TR><TD>)>>12:00-13:00<<HTML(</TD><TD>)>>'''ACRI Visiting Scholars Research Seminar''' ''(Lecture S. Baillet)'' <<BR>> Lunch will be provided <<HTML(</TD></TR>)>> <<HTML(<TR><TD>)>>13:00-14:30<<HTML(</TD><TD>)>>'''Subject level analysis''' Subject averages (sensors, time-frequency and sources) Within subject differences <<HTML(</TD></TR>)>> <<HTML(<TR><TD>)>>14:30-16:00<<HTML(</TD><TD>)>>'''Group level analysis''' Preparing sensor, time-frequency and sources data <<HTML(</TD></TR>)>> <<HTML(</TABLE>)>> === Day 3 === <<HTML(<TABLE>)>> <<HTML(<TR><TD>)>>09:00-09:30<<HTML(</TD><TD>)>>'''Connectivity & resting-state & evoked response''' ''(Lecture S. Baillet)''<<HTML(</TD></TR>)>> <<HTML(<TR><TD>)>>09:30-10:00<<HTML(</TD><TD>)>>'''Connectivity''' Functional connectivity <<HTML(</TD></TR>)>> <<HTML(<TR><TD>)>>10:00-11:00<<HTML(</TD><TD>)>>'''Beyond the GUI''' Scripting GitHub <<HTML(</TD></TR>)>> <<HTML(<TR><TD>)>>11:00-12:00<<HTML(</TD><TD>)>>'''Participants working with their own data'''<<HTML(</TD></TR>)>> <<HTML(<TR><TD>)>>12:00-13:00<<HTML(</TD><TD>)>>''Lunch''<<HTML(</TD></TR>)>> <<HTML(<TR><TD>)>>12:00-15:30<<HTML(</TD><TD>)>>'''Participants working with their own data'''<<HTML(</TD></TR>)>> <<HTML(<TR><TD>)>>15:30-16:00<<HTML(</TD><TD>)>>'''Wrap-up''' <<HTML(</TABLE>)>> |
|
| Line 187: | Line 125: |
| The last session will be mostly dedicated to addressing participants' requests. We encourage you to bring in your own sample of MEG/EEG data that you would be interested in processing with Brainstorm. We may ask that you pair with other attendees, for logistics purposes. | The last session will be mostly dedicated to addressing participants' requests. We encourage you to bring in your own sample of data that you would be interested in processing with Brainstorm. We may ask that you pair with other attendees, for logistics purposes. |
| Line 196: | Line 134: |
| For any technical problem, please contact Takfarinas Medani( [[mailto:raymundo.cassani@mcgill.ca|medani@usc.edu]] ) or Raymundo Cassani ( raymundo.cassani@mcgill.ca ) |
!!!Page under construction!!!
Park City, Utah, USA: April 1st, 2024
Full-day lectures and workshop on Brainstorm as part of the International Conference on Artificial Intelligence in Epilepsy and Neurological Disorders in Park City. This session will be an introduction to Brainstorm features for sEEG analysis.
Participants will learn how to use Brainstorm and access its new tools on their personal laptops.
General information
| Where | Park City |
| When | April 1st, 2024, 8:30-17:00 |
| Registration | Please visit this page. |
| Organizers | IA EPILEPSY 2024 |
| Instructors | John Mosher, Takfarinas Medani and TBA (UTH/USC, USA) |
| Audience | Users interested in analyzing sEEG/ECOG recordings using Brainstorm. Some experience with iEEG and signal processing is recommended. Teaching in English. Number of participants: XX |
| Slides | TBD Intro slides | Lectures slides | Walkthrough | Survey |
Requirements
In order to make the workshop as efficient as possible, we ask all the attendees to: download, install and test the software and download the workshop dataset on their laptops prior to the workshop.
Installing Brainstorm
Please read carefully the following instructions on:
preparing your laptop for the training
Program
April 1st
| 09:30-10:00 | Registration, check in |
| 10:00-10:05 | R |
| 12:30-13:00 | Onsite assistance in installing the material for the training session |
| 13:00-13:30 | Lecture: Brainstorm overview Software structure, typical data workflow Presentation of the example dataset (BIDS-iEEG) |
| 13:30-14:30 | Anatomy Database explorer MRI volumes, surfaces Anatomical parcellations Coregistration of pre- and post-implantation images |
| 14:30-15:30 | SEEG recordings Reviewing continuous SEEG recordings Montages and management of event markers Marking SEEG contacts on post-implantation image Anatomical labelling of SEEG contacts |
| 15:30-16:30 | Advanced topics - Based on participants' requests Time-frequency analysis: Identification of ictal HFO frequency bands Epileptogenicity maps: Localization of the seizure onset zone and propagation pathways FEM demo: MRI segmentation, tissue anisotropy with DTI, FEM forward modeling Open discussion with Bainstorm users |
Bring your own data
The last session will be mostly dedicated to addressing participants' requests. We encourage you to bring in your own sample of data that you would be interested in processing with Brainstorm. We may ask that you pair with other attendees, for logistics purposes.
The file formats that can be read by Brainstorm are listed on the Introduction page. Please contact us in advance if you are not sure your dataset can be imported in Brainstorm. If you do not have data available, you may continue to use the tutorial dataset used in the present workshop.
Troubleshooting
For any technical problem, please contact Takfarinas Medani( medani@usc.edu ) or Raymundo Cassani ( raymundo.cassani@mcgill.ca )