Om_assemble issue when trying to compute head model

Bugs
1

I'm trying to compute a head model using OpenMEEG. I'm having the same issue as this post right here, however neither of the solutions are working.

The error messages read:
OpenMEEG error #1:
./om_assemble: /lib64/libc.so.6: version 'GLIBC_2.14' not found (required by ./om_assemble)
./om_assemble: /software/Matlab2012b/sys/os/glnxa64/libstdc++.so.6: version 'GLIBCXX_3.4.19' not found (required by ./om_assemble)
./om_assemble: /lib64/libc.so.6: version 'GLIBC_2.14' not found (requred by /home/user/.brainstorm/openmeeg/linux64/libOpenMEEG.so.1)
./om_assemble: /software/Matlab2012b/sys/os/glnxa64/libstdc++.so.6: version 'GLIBCXX_3.4.15' not found (required by ./home/user/.brainstorm/openmeeg/linux64.libOpenMEEGMaths.so.1)
./om_assemble: /lib64/libc.so.6: version 'GLIBC_2.14' not found (requred by /home/user/.brainstorm/openmeeg/linux64/libOpenMEEGMaths.so.1)

I have tried this on Matlab2012b and 2017b.

Best

2

what version of Linux are you using? Can you tell us what version of gcc is available on your system?

You need to run:

gcc --version

thanks
Alex

3

Can you run aswell:

ldd --version

and

ldd ~/.brainstorm/openmeeg/linux64/om_assemble

note that the last command is meant for linux. (adapt it as needed)

4

@Alexandre
gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-3)
Copyright © 2010 Free Software Foundation, Inc.

@sik
ldd (GNU libc) 2.12
Copyright © 2010 Free Software Foundation, Inc.

and

/home/user/.brainstorm/openmeeg/linux64/om_assemble: /lib64/libc.so.6: version GLIBC_2.14' not found (required by /home/*user*/.brainstorm/openmeeg/linux64/om_assemble) /home/*user*/.brainstorm/openmeeg/linux64/om_assemble: /usr/lib64/libstdc++.so.6: versionGLIBCXX_3.4.19’ not found (required by /home/user/.brainstorm/openmeeg/linux64/om_assemble)
linux-vdso.so.1 => (0x00007fff49fff000)
libOpenMEEG.so.1 => not found
libOpenMEEGMaths.so.1 => not found
libgomp.so.1 => /usr/lib64/libgomp.so.1 (0x0000003b21200000)
libstdc++.so.6 => /usr/lib64/libstdc++.so.6 (0x0000003b2c600000)
libgcc_s.so.1 => /lib64/libgcc_s.so.1 (0x0000003b2ba00000)
libc.so.6 => /lib64/libc.so.6 (0x0000003b1f600000)
librt.so.1 => /lib64/librt.so.1 (0x0000003b20600000)
libpthread.so.0 => /lib64/libpthread.so.0 (0x0000003b1fe00000)
libm.so.6 => /lib64/libm.so.6 (0x0000003b1fa00000)
/lib64/ld-linux-x86-64.so.2 (0x0000003b1f200000)

Thank you for both of your replies by the way :slight_smile:

5

The main issue is that you are using glibc-2.12 which dates from August 2010 and OpenMEEG is build against 2.14 minimum (Oct 2011). Unless there’s a strict need for using such an old glibc, I would recommend to update glibc.

6

I started documenting a workaround for the GLIBCXX error here:
https://neuroimage.usc.edu/brainstorm/Tutorials/TutBem#Errors