I tried to run a CAT12 MRI segmentation on a nifti file that I had imported into Brainstorm and after about 20-30 minutes of running CAT12 there was an error messages stating two surface files were not found "lh.central and rh.central". I got this message even after updating to the latest version of CAT12. Anyone have any ideas on what is happening?
Does the MRI need to be a "T1.mgz" file in order to work with CAT12?
Pasting the full error message just in case:
372 - cat_main_gintnorm1639
109 - cat_main1639
907 - cat_run_job1639
34 - cat_run_newcatch
865 - run_job
455 - cat_run
29 - cfg_run_cm
1717 - local_runcj
972 - cfg_util
469 - fill_run_job
247 - spm_jobman
318 - Compute
371 - ComputeInteractive
28 - process_segment_cat12
28 - bst_call
609 - @(h,ev)bst_call(@process_segment_cat12,'ComputeInteractive',iSubject,[])
Print 'Graphics' figure to:
C:\Users\rawan.brainstorm\tmp\cat12\report\catreport_E-0318.pdf
Remove "C:\Users\rawan.brainstorm\tmp\cat12\mri\p1E-0318.nii" from dependency list because it does not exist!
One or multiple files do not exist and were removed from the dependency list
and following batches will may not work correctly!
Remove "C:\Users\rawan.brainstorm\tmp\cat12\mri\p2E-0318.nii" from dependency list because it does not exist!
One or multiple files do not exist and were removed from the dependency list
and following batches will may not work correctly!
Remove "C:\Users\rawan.brainstorm\tmp\cat12\mri\p3E-0318.nii" from dependency list because it does not exist!
One or multiple files do not exist and were removed from the dependency list
and following batches will may not work correctly!
Remove "C:\Users\rawan.brainstorm\tmp\cat12\mri\p4E-0318.nii" from dependency list because it does not exist!
One or multiple files do not exist and were removed from the dependency list
and following batches will may not work correctly!
Remove "C:\Users\rawan.brainstorm\tmp\cat12\mri\p5E-0318.nii" from dependency list because it does not exist!
One or multiple files do not exist and were removed from the dependency list
and following batches will may not work correctly!
Remove "C:\Users\rawan.brainstorm\tmp\cat12\mri\p6E-0318.nii" from dependency list because it does not exist!
One or multiple files do not exist and were removed from the dependency list
and following batches will may not work correctly!
Remove "C:\Users\rawan.brainstorm\tmp\cat12\mri\p0E-0318.nii" from dependency list because it does not exist!
One or multiple files do not exist and were removed from the dependency list
and following batches will may not work correctly!
Remove "C:\Users\rawan.brainstorm\tmp\cat12\label\catROIs_E-0318.xml" from dependency list because it does not exist!
One or multiple files do not exist and were removed from the dependency list
and following batches will may not work correctly!
Remove "C:\Users\rawan.brainstorm\tmp\cat12\surf\lh.central.E-0318.gii" from dependency list because it does not exist!
One or multiple files do not exist and were removed from the dependency list
and following batches will may not work correctly!
Remove "C:\Users\rawan.brainstorm\tmp\cat12\surf\lh.sphere.E-0318.gii" from dependency list because it does not exist!
One or multiple files do not exist and were removed from the dependency list
and following batches will may not work correctly!
Remove "C:\Users\rawan.brainstorm\tmp\cat12\surf\lh.sphere.reg.E-0318.gii" from dependency list because it does not exist!
One or multiple files do not exist and were removed from the dependency list
and following batches will may not work correctly!
Remove "C:\Users\rawan.brainstorm\tmp\cat12\surf\lh.thickness.E-0318" from dependency list because it does not exist!
One or multiple files do not exist and were removed from the dependency list
and following batches will may not work correctly!
Remove "C:\Users\rawan.brainstorm\tmp\cat12\surf\lh.pbt.E-0318" from dependency list because it does not exist!
One or multiple files do not exist and were removed from the dependency list
and following batches will may not work correctly!
Remove "C:\Users\rawan.brainstorm\tmp\cat12\surf\rh.central.E-0318.gii" from dependency list because it does not exist!
One or multiple files do not exist and were removed from the dependency list
and following batches will may not work correctly!
Remove "C:\Users\rawan.brainstorm\tmp\cat12\surf\rh.sphere.E-0318.gii" from dependency list because it does not exist!
One or multiple files do not exist and were removed from the dependency list
and following batches will may not work correctly!
Remove "C:\Users\rawan.brainstorm\tmp\cat12\surf\rh.sphere.reg.E-0318.gii" from dependency list because it does not exist!
One or multiple files do not exist and were removed from the dependency list
and following batches will may not work correctly!
Remove "C:\Users\rawan.brainstorm\tmp\cat12\surf\rh.thickness.E-0318" from dependency list because it does not exist!
One or multiple files do not exist and were removed from the dependency list
and following batches will may not work correctly!
Remove "C:\Users\rawan.brainstorm\tmp\cat12\surf\rh.pbt.E-0318" from dependency list because it does not exist!
One or multiple files do not exist and were removed from the dependency list
and following batches will may not work correctly!
09-Nov-2020 14:38:34 - Done 'CAT12: Segmentation (current release)'
09-Nov-2020 14:38:34 - Done
** Error: Could not import CAT12 folder:
** Surface file was not found: lh.central
** Surface file was not found: rh.central
**