Park City, Utah, USA: April 1st, 2024
Full-day of lectures and a workshop on Brainstorm as part of the International Conference on Artificial Intelligence in Epilepsy and Neurological Disorders in Park City. This session will be an introduction to Brainstorm features for sEEG analysis.
Participants will learn how to use Brainstorm and access its new tools on their personal laptops.
|When||April 1st, 2024, 8:30-17:00|
|Registration||Please visit this page.|
|Organizers|| IA EPILEPSY 2024 |
|Instructors|| John Mosher, Takfarinas Medani and TBA |
|Audience||Users interested in analyzing sEEG/ECOG recordings using Brainstorm.|
Some experience with iEEG and signal processing is recommended. Teaching in English.
Number of participants: XX
|Slides||TBD Intro slides | Lectures slides | Walkthrough | Survey|
In order to make the workshop as efficient as possible, we ask all the attendees to: download, install and test the software and download the workshop dataset on their laptops prior to the workshop.
Please read carefully the following instructions on:
preparing your laptop for the training
|09:30-10:00||Registration, check in|
|10:00-10:05||Richard Leahy, Introduction to Workshop|
|10:05-10:25||Philippe Ryvlin, SEEG and the Human Brain Project|
|10:25-10:45||John Mosher, BioPhysics of SEEG|
|10:45-11:05||Manish Shah, Source Localization on Brainstorm|
|11:05-12:30||Jay Gavalla, SEEG and Multimodality Clinical Applications in Brainstorm|
|12:30-13:15||Onsite assistance in installing the material for the training session|
Lecture: Brainstorm overview
Software structure, typical data workflow
Presentation of the example dataset (BIDS-iEEG)
MRI volumes, surfaces
Coregistration of pre- and post-implantation images
Reviewing continuous SEEG recordings
Montages and management of event markers
Marking SEEG contacts on post-implantation image
Anatomical labelling of SEEG contacts
Advanced topics - Based on participants' requests
Time-frequency analysis: Identification of ictal HFO frequency bands
Epileptogenicity maps: Localization of the seizure onset zone and propagation pathways
FEM demo: MRI segmentation, tissue anisotropy with DTI, FEM forward modeling
Open discussion with Brainstorm users
End of workshop, main conference begins at 6pm
Bring your own data
The last session will be mostly dedicated to addressing participants' requests. We encourage you to bring in your own sample of data that you would be interested in processing with Brainstorm. We may ask that you pair with other attendees, for logistics purposes.
The file formats that can be read by Brainstorm are listed on the Introduction page. Please contact us in advance if you are not sure your dataset can be imported in Brainstorm. If you do not have data available, you may continue to use the tutorial dataset used in the present workshop.