|
Size: 2006
Comment:
|
Size: 2239
Comment:
|
| Deletions are marked like this. | Additions are marked like this. |
| Line 1: | Line 1: |
| == Digimouse: Creation of Atlas == . [[Digimouse|Overview]] | [[Digimouse_Data_Acquisition|Data Acquisition]] | [[Digimouse_Registration|Registration]] | [[Digimouse_Creation_of_Atlas|Creation of Atlas]]] | [[Digimouse_Simulations|Simulations]] | '''Download''' |
= Digimouse: Download = . [[Digimouse|Overview]] | [[Digimouse_Data_Acquisition|Data Acquisition]] | [[Digimouse_Registration|Registration]] | [[Digimouse_Creation_of_Atlas|Creation of Atlas]] | [[Digimouse_Simulations|Simulations]] | '''Download''' | [[Digimouse_license|License]] |
| Line 5: | Line 5: |
| {{{#!wiki tip Please review the [[Digimouse_license|License]] under which it is distributed. }}} |
|
| Line 6: | Line 9: |
| Line 11: | Line 13: |
| * [[http://neuroimage.usc.edu/mouse_atlas/pet_data.zip|PET Data]] * [[http://neuroimage.usc.edu/mouse_atlas/ct_data.zip|CT Data]] * [[http://neuroimage.usc.edu/mouse_atlas/cryo_data.zip|Cryosection Data]] * [[http://neuroimage.usc.edu/mouse_atlas/atlas.zip|Atlas Data]] |
|
| Line 12: | Line 18: |
| '''[[http://neuroimage.usc.edu/Digimouse_jiv.html|Java Viewer]] which shows 3D orthogonal views of registered PET, CT, Cryosections and Atlas''' (You need to enable Java support in your browser in order to run this applet) <<BR>><<BR>> | |
| Line 13: | Line 20: |
| '''Download''': * [[http://neuroimage.usc.edu/mouse_atlas/pet_data.zip|PET]] * [[http://neuroimage.usc.edu/mouse_atlas/ct_data.zip|CT]] * [[http://neuroimage.usc.edu/mouse_atlas/cryo_data.zip|Cryosection]] * [[http://neuroimage.usc.edu/mouse_atlas/atlas.zip|Atlas]] '''[[http://neuroimage.usc.edu/Digimouse_jiv.html|Java Viewer]] which shows 3D orthogonal views of registered PET, CT, Cryosections and Atlas''' (You need to enable Java support in your browser in order to run this applet) |
---- |
| Line 23: | Line 23: |
| ||<tablewidth="86%"style="border:none"> Download<<BR>> Matrix size: <<BR>> Voxel size: <<BR>> Size: <<BR>> Format ||<style="text-align:center;border:none">'''[[http://neuroimage.usc.edu/mouse_atlas/pet_raw_data.zip|PET]]''' <<BR>>128 x 127 x 128 <<BR>> 0.4 x 0.4 x 0.6 mm^3^ <<BR>> 8MB <<BR>> Float ||<style="text-align:center;border:none">'''[[http://neuroimage.usc.edu/mouse_atlas/ct_raw_data.zip|CT]]''' <<BR>> 512 x 942 x 512 <<BR>> 0.1 x 0.1 x 0.1 mm^3^ <<BR>> 900MB <<BR>> Float||<style="text-align:center;border:none">'''[[http://neuroimage.usc.edu/mouse_atlas/raw_cryosections.zip|Cryosection]]''' <<BR>>1704 x 2560 x 418 <<BR>>38.8 x 38.8 x 50um^3^ <<BR>> 600MB <<BR>> jpeg|| | ||<tablewidth="86%"style="border:none">Download: <<BR>> Matrix size: <<BR>> Voxel size: <<BR>> Size: <<BR>> Format: ||<style="text-align:center;border:none">'''[[http://neuroimage.usc.edu/mouse_atlas/pet_raw_data.zip|PET Data]]''' <<BR>>128 x 127 x 128 <<BR>> 0.4 x 0.4 x 0.6 mm^3^ <<BR>> 8MB <<BR>> Float ||<style="text-align:center;border:none">'''[[http://neuroimage.usc.edu/mouse_atlas/ct_raw_data.zip|CT Data]]''' <<BR>> 512 x 942 x 512 <<BR>> 0.1 x 0.1 x 0.1 mm^3^ <<BR>> 900MB <<BR>> Float ||<style="text-align:center;border:none">'''[[http://neuroimage.usc.edu/mouse_atlas/raw_cryosections.zip|Cryosection Data]]''' <<BR>>1704 x 2560 x 418 <<BR>>38.8 x 38.8 x 50um^3^ <<BR>> 600MB <<BR>> jpeg || |
| Line 27: | Line 27: |
<<BR>> ---- |
|
| Line 28: | Line 32: |
* .mat file which can be loaded in MATLAB |
* [[http://neuroimage.usc.edu/mouse_atlas/tesselated_atlas.zip|.mat file]] which can be loaded in MATLAB |
Digimouse: Download
Overview | Data Acquisition | Registration | Creation of Atlas | Simulations | Download | License
Please review the License under which it is distributed.
The Coregistered Data with the Atlas
- Matrix size: 380 x 992 x 208
- Voxel size: 0.1mm x 0.1mm x 0.1mm
- Size: ~77MB
The data is in ANALYZE format which can be viewed using BrainSuite.
Java Viewer which shows 3D orthogonal views of registered PET, CT, Cryosections and Atlas (You need to enable Java support in your browser in order to run this applet)
The Raw Data
Download: |
PET Data |
CT Data |
Cryosection Data |
Tesselated Atlas
.mat file which can be loaded in MATLAB
- includes .txt file which has the assignments of the tetrahedrons to each organ
- 306,773 elements and 58,244 nodes (16,164 surface nodes and 42,080 internal nodes)