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← Revision 12 as of 2025-03-06 00:19:50 ⇥
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| == Digimouse: Creation of Atlas == . [[Digimouse|Overview]] | [[Digimouse_Data_Acquisition|Data Acquisition]] | [[Digimouse_Registration|Registration]] | [[Digimouse_Creation_of_Atlas|Creation of Atlas]]] | [[Digimouse_Simulations|Simulations]] | '''Download''' |
= Digimouse: Download = . [[Digimouse|Overview]] | [[Digimouse_Data_Acquisition|Data Acquisition]] | [[Digimouse_Registration|Registration]] | [[Digimouse_Creation_of_Atlas|Creation of Atlas]] | [[Digimouse_Simulations|Simulations]] | '''Download''' | [[Digimouse_license|License]] |
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| {{{#!wiki tip Please review the [[Digimouse_license|License]] under which it is distributed. }}} |
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| * [[http://neuroimage.usc.edu/mouse_atlas/pet_data.zip|PET Data]] * [[http://neuroimage.usc.edu/mouse_atlas/ct_data.zip|CT Data]] * [[http://neuroimage.usc.edu/mouse_atlas/cryo_data.zip|Cryosection Data]] * [[http://neuroimage.usc.edu/mouse_atlas/atlas.zip|Atlas Data]] |
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| {{{#!wiki note If clicking on the data in Download page does not work, just right click on it '''> Save link as…''' }}} |
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| '''Download''': * [[http://neuroimage.usc.edu/mouse_atlas/pet_data.zip|PET]] * [[http://neuroimage.usc.edu/mouse_atlas/ct_data.zip|CT]] * [[http://neuroimage.usc.edu/mouse_atlas/cryo_data.zip|Cryosection]] * [[http://neuroimage.usc.edu/mouse_atlas/atlas.zip|Atlas]] |
{{{#!wiki note '''[[http://neuroimage.usc.edu/Digimouse_jiv.html|Java Viewer]] which shows 3D orthogonal views of registered PET, CT, Cryosections and Atlas''' (You need to enable Java support in your browser in order to run this applet) }}} |
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| '''[[http://neuroimage.usc.edu/Digimouse_jiv.html|Java Viewer]] which shows 3D orthogonal views of registered PET, CT, Cryosections and Atlas''' (You need to enable Java support in your browser in order to run this applet) |
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| ||<tablewidth="86%"style="border:none"> Download<<BR>> Matrix size: <<BR>> Voxel size: <<BR>> Size: <<BR>> Format ||<style="text-align:center;border:none">'''[[http://neuroimage.usc.edu/mouse_atlas/pet_raw_data.zip|PET]]''' <<BR>>128 x 127 x 128 <<BR>> 0.4 x 0.4 x 0.6 mm^3^ <<BR>> 8MB <<BR>> Float ||<style="text-align:center;border:none">'''[[http://neuroimage.usc.edu/mouse_atlas/ct_raw_data.zip|CT]]''' <<BR>> 512 x 942 x 512 <<BR>> 0.1 x 0.1 x 0.1 mm^3^ <<BR>> 900MB <<BR>> Float||<style="text-align:center;border:none">'''[[http://neuroimage.usc.edu/mouse_atlas/raw_cryosections.zip|Cryosection]]''' <<BR>>1704 x 2560 x 418 <<BR>>38.8 x 38.8 x 50um^3^ <<BR>> 600MB <<BR>> jpeg|| | ||<tablewidth="86%"style="border:none">Download: <<BR>> Matrix size: <<BR>> Voxel size: <<BR>> Size: <<BR>> Format: ||<style="text-align:center;border:none">'''[[http://neuroimage.usc.edu/mouse_atlas/pet_raw_data.zip|PET Data]]''' <<BR>>128 x 127 x 128 <<BR>> 0.4 x 0.4 x 0.6 mm^3^ <<BR>> 8MB <<BR>> Float ||<style="text-align:center;border:none">'''[[http://neuroimage.usc.edu/mouse_atlas/ct_raw_data.zip|CT Data]]''' <<BR>> 512 x 942 x 512 <<BR>> 0.1 x 0.1 x 0.1 mm^3^ <<BR>> 900MB <<BR>> Float ||<style="text-align:center;border:none">'''[[http://neuroimage.usc.edu/mouse_atlas/raw_cryosections.zip|Cryosection Data]]''' <<BR>>1704 x 2560 x 418 <<BR>>38.8 x 38.8 x 50um^3^ <<BR>> 600MB <<BR>> jpeg || |
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* .mat file which can be loaded in MATLAB |
* [[http://neuroimage.usc.edu/mouse_atlas/tesselated_atlas.zip|.mat file]] which can be loaded in MATLAB |
Digimouse: Download
Overview | Data Acquisition | Registration | Creation of Atlas | Simulations | Download | License
Please review the License under which it is distributed.
The Coregistered Data with the Atlas
- Matrix size: 380 x 992 x 208
- Voxel size: 0.1mm x 0.1mm x 0.1mm
- Size: ~77MB
The data is in ANALYZE format which can be viewed using BrainSuite.
If clicking on the data in Download page does not work, just right click on it > Save link as…
Java Viewer which shows 3D orthogonal views of registered PET, CT, Cryosections and Atlas (You need to enable Java support in your browser in order to run this applet)
The Raw Data
Download: |
PET Data |
CT Data |
Cryosection Data |
Tesselated Atlas
.mat file which can be loaded in MATLAB
- includes .txt file which has the assignments of the tetrahedrons to each organ
- 306,773 elements and 58,244 nodes (16,164 surface nodes and 42,080 internal nodes)