|
Size: 2006
Comment:
|
Size: 2139
Comment:
|
| Deletions are marked like this. | Additions are marked like this. |
| Line 1: | Line 1: |
| == Digimouse: Creation of Atlas == . [[Digimouse|Overview]] | [[Digimouse_Data_Acquisition|Data Acquisition]] | [[Digimouse_Registration|Registration]] | [[Digimouse_Creation_of_Atlas|Creation of Atlas]]] | [[Digimouse_Simulations|Simulations]] | '''Download''' |
= Digimouse: Download = . [[Digimouse|Overview]] | [[Digimouse_Data_Acquisition|Data Acquisition]] | [[Digimouse_Registration|Registration]] | [[Digimouse_Creation_of_Atlas|Creation of Atlas]] | [[Digimouse_Simulations|Simulations]] | '''Download''' | [[Digimouse_license|License]] |
| Line 6: | Line 6: |
| Line 11: | Line 10: |
| * [[http://neuroimage.usc.edu/mouse_atlas/pet_data.zip|PET Data]] * [[http://neuroimage.usc.edu/mouse_atlas/ct_data.zip|CT Data]] * [[http://neuroimage.usc.edu/mouse_atlas/cryo_data.zip|Cryosection Data]] * [[http://neuroimage.usc.edu/mouse_atlas/atlas.zip|Atlas Data]] |
|
| Line 12: | Line 15: |
| '''[[http://neuroimage.usc.edu/Digimouse_jiv.html|Java Viewer]] which shows 3D orthogonal views of registered PET, CT, Cryosections and Atlas''' (You need to enable Java support in your browser in order to run this applet) <<BR>><<BR>> | |
| Line 13: | Line 17: |
| '''Download''': * [[http://neuroimage.usc.edu/mouse_atlas/pet_data.zip|PET]] * [[http://neuroimage.usc.edu/mouse_atlas/ct_data.zip|CT]] * [[http://neuroimage.usc.edu/mouse_atlas/cryo_data.zip|Cryosection]] * [[http://neuroimage.usc.edu/mouse_atlas/atlas.zip|Atlas]] '''[[http://neuroimage.usc.edu/Digimouse_jiv.html|Java Viewer]] which shows 3D orthogonal views of registered PET, CT, Cryosections and Atlas''' (You need to enable Java support in your browser in order to run this applet) |
---- |
| Line 23: | Line 20: |
| ||<tablewidth="86%"style="border:none"> Download<<BR>> Matrix size: <<BR>> Voxel size: <<BR>> Size: <<BR>> Format ||<style="text-align:center;border:none">'''[[http://neuroimage.usc.edu/mouse_atlas/pet_raw_data.zip|PET]]''' <<BR>>128 x 127 x 128 <<BR>> 0.4 x 0.4 x 0.6 mm^3^ <<BR>> 8MB <<BR>> Float ||<style="text-align:center;border:none">'''[[http://neuroimage.usc.edu/mouse_atlas/ct_raw_data.zip|CT]]''' <<BR>> 512 x 942 x 512 <<BR>> 0.1 x 0.1 x 0.1 mm^3^ <<BR>> 900MB <<BR>> Float||<style="text-align:center;border:none">'''[[http://neuroimage.usc.edu/mouse_atlas/raw_cryosections.zip|Cryosection]]''' <<BR>>1704 x 2560 x 418 <<BR>>38.8 x 38.8 x 50um^3^ <<BR>> 600MB <<BR>> jpeg|| | ||<tablewidth="86%"style="border:none">Download: <<BR>> Matrix size: <<BR>> Voxel size: <<BR>> Size: <<BR>> Format: ||<style="text-align:center;border:none">'''[[http://neuroimage.usc.edu/mouse_atlas/pet_raw_data.zip|PET Data]]''' <<BR>>128 x 127 x 128 <<BR>> 0.4 x 0.4 x 0.6 mm^3^ <<BR>> 8MB <<BR>> Float ||<style="text-align:center;border:none">'''[[http://neuroimage.usc.edu/mouse_atlas/ct_raw_data.zip|CT Data]]''' <<BR>> 512 x 942 x 512 <<BR>> 0.1 x 0.1 x 0.1 mm^3^ <<BR>> 900MB <<BR>> Float ||<style="text-align:center;border:none">'''[[http://neuroimage.usc.edu/mouse_atlas/raw_cryosections.zip|Cryosection Data]]''' <<BR>>1704 x 2560 x 418 <<BR>>38.8 x 38.8 x 50um^3^ <<BR>> 600MB <<BR>> jpeg || |
| Line 27: | Line 24: |
<<BR>> ---- |
|
| Line 28: | Line 29: |
* .mat file which can be loaded in MATLAB |
* [[http://neuroimage.usc.edu/mouse_atlas/tesselated_atlas.zip|.mat file]] which can be loaded in MATLAB |
Digimouse: Download
Overview | Data Acquisition | Registration | Creation of Atlas | Simulations | Download | License
The Coregistered Data with the Atlas
- Matrix size: 380 x 992 x 208
- Voxel size: 0.1mm x 0.1mm x 0.1mm
- Size: ~77MB
The data is in ANALYZE format which can be viewed using BrainSuite.
Java Viewer which shows 3D orthogonal views of registered PET, CT, Cryosections and Atlas (You need to enable Java support in your browser in order to run this applet)
The Raw Data
Download: |
PET Data |
CT Data |
Cryosection Data |
Tesselated Atlas
.mat file which can be loaded in MATLAB
- includes .txt file which has the assignments of the tetrahedrons to each organ
- 306,773 elements and 58,244 nodes (16,164 surface nodes and 42,080 internal nodes)