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| '''[[http://neuroimage.usc.edu/Digimouse_jiv.html|Java Viewer]] which shows 3D orthogonal views of registered PET, CT, Cryosections and Atlas''' (You need to enable Java support in your browser in order to run this applet) <<BR>><<BR>> |
'''[[http://neuroimage.usc.edu/Digimouse_jiv.html|Java Viewer]] which shows 3D orthogonal views of registered PET, CT, Cryosections and Atlas''' (You need to enable Java support in your browser in order to run this applet) <<BR>><<BR>> |
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| ||<tablewidth="86%"style="border:none">Download<<BR>> Matrix size: <<BR>> Voxel size: <<BR>> Size: <<BR>> Format ||<style="text-align:center;border:none">'''[[http://neuroimage.usc.edu/mouse_atlas/pet_raw_data.zip|PET]]''' <<BR>>128 x 127 x 128 <<BR>> 0.4 x 0.4 x 0.6 mm^3^ <<BR>> 8MB <<BR>> Float ||<style="text-align:center;border:none">'''[[http://neuroimage.usc.edu/mouse_atlas/ct_raw_data.zip|CT]]''' <<BR>> 512 x 942 x 512 <<BR>> 0.1 x 0.1 x 0.1 mm^3^ <<BR>> 900MB <<BR>> Float ||<style="text-align:center;border:none">'''[[http://neuroimage.usc.edu/mouse_atlas/raw_cryosections.zip|Cryosection]]''' <<BR>>1704 x 2560 x 418 <<BR>>38.8 x 38.8 x 50um^3^ <<BR>> 600MB <<BR>> jpeg || | ||<tablewidth="86%"style="border:none">Download: <<BR>> Matrix size: <<BR>> Voxel size: <<BR>> Size: <<BR>> Format: ||<style="text-align:center;border:none">'''[[http://neuroimage.usc.edu/mouse_atlas/pet_raw_data.zip|PET Data]]''' <<BR>>128 x 127 x 128 <<BR>> 0.4 x 0.4 x 0.6 mm^3^ <<BR>> 8MB <<BR>> Float ||<style="text-align:center;border:none">'''[[http://neuroimage.usc.edu/mouse_atlas/ct_raw_data.zip|CT Data]]''' <<BR>> 512 x 942 x 512 <<BR>> 0.1 x 0.1 x 0.1 mm^3^ <<BR>> 900MB <<BR>> Float ||<style="text-align:center;border:none">'''[[http://neuroimage.usc.edu/mouse_atlas/raw_cryosections.zip|Cryosection Data]]''' <<BR>>1704 x 2560 x 418 <<BR>>38.8 x 38.8 x 50um^3^ <<BR>> 600MB <<BR>> jpeg || |
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| * .mat file which can be loaded in MATLAB | * [[http://neuroimage.usc.edu/mouse_atlas/tesselated_atlas.zip|.mat file]] which can be loaded in MATLAB |
Digimouse: Creation of Atlas
Overview | Data Acquisition | Registration | Creation of Atlas] | Simulations | Download
The Coregistered Data with the Atlas
- Matrix size: 380 x 992 x 208
- Voxel size: 0.1mm x 0.1mm x 0.1mm
- Size: ~77MB
The data is in ANALYZE format which can be viewed using BrainSuite.
Java Viewer which shows 3D orthogonal views of registered PET, CT, Cryosections and Atlas (You need to enable Java support in your browser in order to run this applet)
The Raw Data
Download: |
PET Data |
CT Data |
Cryosection Data |
Tesselated Atlas
.mat file which can be loaded in MATLAB
- includes .txt file which has the assignments of the tetrahedrons to each organ
- 306,773 elements and 58,244 nodes (16,164 surface nodes and 42,080 internal nodes)