Cite Brainstorm in your publications

Once you are done with your analyses performed with Brainstorm, proper citation would be greatly appreciated; thank you!

How to cite...

... Brainstorm

• Data analysis was performed with Brainstorm (Tadel et al. 2011), which is documented and freely available for download online under the GNU general public license (http://neuroimage.usc.edu/brainstorm).

• Group analysis processing pipeline: Tadel et al. 2019
• Resting state processing pipeline: Niso et al. 2019

... forward models

• Spherical head model: Mosher et al. 1999
• Overlapping spheres: Huang et al., 1999
• OpenMEEG BEM: Gramfort et al., 2010 / Kybic et al., 2005

... inverse methods

• Tikhonov-regularized minimum-norm: Baillet et al., 2001.
  Default value for Tikhonov parameter is λ = 10% of maximum singular value of the lead field.

... the default anatomy

• Colin27: MNI brain with a 1mm resolution. More info....

... FreeSurfer

• Whether you are using FreeSurfer for the T1 segmentation, the cortical atlases or the FSAverage subject default: please register on their website (registration page) and cite the appropriate references.

... statistical analysis using non-parametric permutation tests

• Permutation tests: Pantazis et al., 2005.

... the tutorial datasets

• TODO

Publications

The previous citations refer to the following publications. Further reading is available in the Publications section.

• Baillet S, Mosher JC, Leahy RM (2001)
  Electromagnetic Brain Mapping
  IEEE Signal Processing Magazine, 18(6): 14-30, Nov 2001

• Gramfort A, Papadopoulo T, Olivi E, Clerc M (2010)
  OpenMEEG: opensource software for quasistatic bioelectromagnetics
  BioMedical Engineering OnLine 45:9, 2010

• Huang MX, Mosher JC, Leahy RM (1999)
  A sensor-weighted overlapping-sphere head model and exhaustive head model comparison for MEG
  Phys Med Biol, 44:423-440

• Kybic J, Clerc M, Abboud T, Faugeras O, Keriven R, Papadopoulo T (2005)
  A common formalism for the integral formulations of the forward EEG problem
  IEEE Transactions on Medical Imaging, 24:12-28, 2005. [pdf]

• Leahy RM, Mosher JC, Spencer ME, Huang MX, Lewine JD (1998)
  A study of dipole localization accuracy for MEG and EEG using a human skull phantom
  Electroencephalography and Clinical Neurophysiology, 107(2):159-73

• Mosher, Leahy RM, Lewis PS (1999)
  EEG and MEG: Forward solutions for inverse methods
  IEEE Trans Biomedical Eng, 46(3):245-259, Mar 1999

• Niso G, Tadel F, Bock E, Cousineau M, Santos A, Baillet S (2019)
  Brainstorm Pipeline Analysis of Resting-State Data from the Open MEG Archive
  Frontiers in Neuroscience, Mar 2019

• Pantazis D, Nichols TE, Baillet S, Leahy RM (2005)
  A Comparison of Random Field Theory and Permutation Methods for the Statistical Analysis of MEG data
  Neuroimage, 25(2):383-394, 2005

• Tadel F, Baillet S, Mosher JC, Pantazis D, Leahy RM (2011)
  Brainstorm: A User-Friendly Application for MEG/EEG Analysis
  Computational Intelligence and Neuroscience, vol. 2011, Article ID 879716, 13 pages, 2011. doi:10.1155/2011/879716

• Tadel F, Bock E, Niso G, Mosher JC, Cousineau M, Pantazis D, Leahy RM, Baillet S (2019)
  MEG/EEG Group Analysis With Brainstorm
  Frontiers in Neuroscience, Feb 2019