|
Size: 6939
Comment:
|
Size: 7196
Comment:
|
| Deletions are marked like this. | Additions are marked like this. |
| Line 33: | Line 33: |
| == Workshop dataset (TBA) == | == Workshop dataset == |
| Line 38: | Line 38: |
| == Program (TBD) == | == Program == |
| Line 67: | Line 68: |
| '''Tutorial – Hands-On Brainstorm 1/3 - '''Y.Vakilna, C.Chinara, & T.Medani | '''Tutorial – Hands-On Brainstorm 1/3 - '''Y.Vakilna, C.Chinara, & T.Medani (Add Johnson) |
| Line 69: | Line 70: |
| ''' Introduction to Brainstorm Interface: Anatomy ''' | ''' Introduction to Brainstorm Interface: Anatomy Data ''' |
| Line 77: | Line 78: |
| CT volumes Coregistration: pre- / post-implantation images | CT volumes Coregistration: pre- / post-implantation images <<HTML(</TD></TR>)>> |
| Line 83: | Line 84: |
| ''' Introduction to Brainstorm Interface: sEEG Analysis''' | ''' Introduction to Brainstorm Interface: Functional Data: sEEG ''' ===> We Recommend you bring a mouse for this section <=== |
| Line 85: | Line 87: |
| Manual marking of SEEG contacts on post-implantation image Automatic marking of SEEG contacts on post-implantation image Automatic anatomical labeling of SEEG contacts |
|
| Line 86: | Line 91: |
| Line 88: | Line 92: |
Marking SEEG contacts on post-implantation image Anatomical labeling of SEEG contacts Automatic SEEG contacts localization and labeling |
|
| Line 97: | Line 95: |
| '''Lunch Break (Provided? to confirm??)'''<<HTML(</TD></TR>)>> | '''Lunch Break (Provided? to confirm/ ask one of the sponsor sEEG??)'''<<HTML(</TD></TR>)>> |
| Line 101: | Line 99: |
| '''SEEG Analysis''' Import precomputed Brainstorm protocol |
'''SEEG Analysis''' ==>Import precomputed Brainstorm protocol<== |
| Line 104: | Line 102: |
| Compute Forward Model (aka Head Model) Compute Noise Covariance Matrix Compute Inverse Model View Source Modeling Results |
sEEG Frequency Analysis and Filtering Compute Forward Model (aka Head Model) Compute Noise Covariance Matrix Compute Inverse Model View Source Results |
| Line 112: | Line 111: |
| '''Coffee Break'''<<HTML(</TD></TR>)>> | '''Coffee Break (provided)'''<<HTML(</TD></TR>)>> |
| Line 114: | Line 113: |
| <<HTML(<TR><TD>)>>15:15-17:30<<HTML(</TD><TD>)>> '''SEEG Advanced Analysis''' Modeling interictal spikes Modeling ictal wave Modeling ictal onset with LVFA at Sensor Space Modeling ictal onset with LVFA at Source Space Modeling ictal onset with repetitive spiking at Sensor and Source spaces |
<<HTML(<TR><TD>)>>15:15-17:30<<HTML(</TD><TD>)>> '''SEEG Advanced Analysis''' Modeling interictal spikes Modeling ictal wave within the seizure window Modeling ictal onset with LVFA at Sensor Space Modeling ictal onset with LVFA at Source Space Modeling ictal onset with repetitive spiking at Sensor and Source spaces |
| Line 125: | Line 125: |
| We will provide [[https://neuroimage.usc.edu/resources/bst_workshop/2024_lax/Walkthrough_lax_workshop_2024_v0.pdf|a detailed step-by-step walkthrough]] of the data analyses performed at the training. In addition, results obtained in this workshop can be replicated with '''this script (to be updated)'''. | We will provide [[https://neuroimage.usc.edu/resources/bst_workshop/2024_lax/Walkthrough_lax_workshop_2024_v0.pdf|a detailed step-by-step walkthrough]] of the data analyses performed at the training. In addition, results obtained in this workshop can be replicated with ''' this script (to be updated)'''. |
| Line 139: | Line 139: |
| For any technical problem, please contact Takfarinas Medani ( medani@usc.edu ) | For any technical problem, please contact Takfarinas Medani ( medani@usc.edu ) & Chinmay ... Todo |
Breckenridge, Colorado, USA: March 3rd, 2025
Full-day of lectures and a workshop on Brainstorm as part of the International Conference on Artificial Intelligence in Epilepsy and Neurological Disorders in Breckenridge. This session will be hands-on Brainstorm features for sEEG analysis.
Participants will learn how to use Brainstorm and access its new tools on their personal laptops.
General information
| Where | Breckenridge |
| When | March 3rd, 2025, 8:30-17:45 |
| Registration | Please visit this page. |
| Organizers | AI EPILEPSY 2025 |
| Instructors | John Mosher, Takfarinas Medani, Yash Vakilna, Johnson Hampson and Raymundo Cassani (UTH/USC USA, McGill Canada ) |
| Audience | Users interested in analyzing sEEG/ECOG recordings using Brainstorm. Some experience with iEEG and signal processing is recommended. Teaching in English. Number of participants: XX |
| Slides | Intro slides | Walkthrough | Survey |
Requirements
In order to make the workshop as efficient as possible, we ask all the attendees to: download, install and test the software and download the workshop dataset on their laptops prior to the workshop.
Installing Brainstorm
Please read carefully the following instructions on:
preparing your laptop for the training
Workshop dataset
In this workshop, we will be working on a SEEG dataset recorded at the Epilepsy Monitoring Unit at UTHealth Houston.
The data is distributed as raw and pre-processed data.
Program
| 08:30-08:55 | Registration & Check in |
| 08:55-09:00 | Introduction to the Workshop - Richard Leahy, USC, USA |
| 09:00-09:20 | BioPhysics of SEEG - John Mosher, UTH, USA |
| 09:20-09:40 | Presentation - Speaker, institute, Country |
| 09:40-10:00 | Brainstorm Overview - Takfarinas Medani, USC, USA |
| 10:00-10:15 | Coffee Break |
| 10:15-11:00 | Tutorial – Hands-On Brainstorm 1/3 - Y.Vakilna, C.Chinara, & T.Medani (Add Johnson) Introduction to Brainstorm Interface: Anatomy Data Database explorer MRI volumes, surfaces Anatomical parcellations CT volumes Coregistration: pre- / post-implantation images |
| 11:00-12:15 | Tutorial – Hands-On Brainstorm 2/3 - Y.Vakilna, C.Chinara, & T.Medani Introduction to Brainstorm Interface: Functional Data: sEEG ===> We Recommend you bring a mouse for this section <=== Manual marking of SEEG contacts on post-implantation image Automatic marking of SEEG contacts on post-implantation image Automatic anatomical labeling of SEEG contacts Reviewing continuous SEEG recordings Montages and management of event markers |
| 12:15-13:00 | Lunch Break (Provided? to confirm/ ask one of the sponsor sEEG??) |
| 13:00-15:00 | Tutorial – Hands-On Brainstorm 3/3 - Y.Vakilna, C.Chinara, & T.Medani SEEG Analysis ==>Import precomputed Brainstorm protocol<== sEEG Montage Configuration sEEG Frequency Analysis and Filtering Compute Forward Model (aka Head Model) Compute Noise Covariance Matrix Compute Inverse Model View Source Results Atlases and Scouts |
| 15:00-15:15 | Coffee Break (provided) |
| 15:15-17:30 | SEEG Advanced Analysis Modeling interictal spikes Modeling ictal wave within the seizure window Modeling ictal onset with LVFA at Sensor Space Modeling ictal onset with LVFA at Source Space Modeling ictal onset with repetitive spiking at Sensor and Source spaces |
We will provide a detailed step-by-step walkthrough of the data analyses performed at the training. In addition, results obtained in this workshop can be replicated with this script (to be updated).
End of the workshop, the main conference begins at 6 pm
Bring your own data
The last session will be mostly dedicated to addressing participants' requests. We encourage you to bring in your own sample of data that you would be interested in processing with Brainstorm. We may ask that you pair with other attendees, for logistics purposes.
The file formats that can be read by Brainstorm are listed on the Introduction page. Please contact us in advance if you are not sure your dataset can be imported in Brainstorm. If you do not have data available, you may continue to use the tutorial dataset used in the present workshop.
Troubleshooting
For any technical problem, please contact Takfarinas Medani ( medani@usc.edu ) & Chinmay ... Todo