|
Size: 1216
Comment:
|
Size: 1371
Comment:
|
| Deletions are marked like this. | Additions are marked like this. |
| Line 4: | Line 4: |
| * '''[[Resources/bfc_correction_tool|BFC Correction tool]]:''' This tool allows user guided bias field correction by manually selecting points. | * '''[[Resources/bfc_correction_tool|BFC Correction tool]]:''' This tool allows user guided bias field correction by manually selecting points. |
| Line 6: | Line 7: |
| * '''[[Resources/prepare_fieldmap|Prepare Fieldmap]]:''' A command line tool for converting scanner saved fieldmap to units of radians/sec. | * '''[[Resources/BST_SVReg_Utilities|Matlab utility functions:]]:''' for processing data generated using BrainSuite and SVReg. |
| Line 8: | Line 10: |
| * '''[[http://neuroimage.usc.edu/CurveProtocol.html|Cortical Delineation Protocol]]''' | |
| Line 10: | Line 11: |
| * '''[[Resources/add_sform_nifti|Add sform matrix to NIfTI-1 files]]:''' This tool adds sform matrix to NIfTI header, if it is absent. | * '''[[Resources/prepare_fieldmap|Prepare Fieldmap]]:''' A command line tool for converting scanner saved fieldmap to units of radians/sec. |
| Line 12: | Line 14: |
| * '''[[http://mr.usc.edu/download/joint-denoising-for-diffusion-mri-magnitude-images|Joint Denoising of Diffusion MRI Magnitude Images]]''': This tool implements a penalized maximum likelihood estimation method for reducing noise in diffusion MRI magnitude images. | |
| Line 14: | Line 15: |
| * '''[[Resources/BrainSuiteSampleDataset|BrainSuite sample dataset]]:''' Mirror of sample dataset for !BrainSuite training. | * '''[[http://neuroimage.usc.edu/CurveProtocol.html|Cortical Delineation Protocol]]''' * '''[[Resources/add_sform_nifti|Add sform matrix to NIfTI-1 files]]:''' This tool adds sform matrix to NIfTI header, if it is absent. * '''[[http://mr.usc.edu/download/joint-denoising-for-diffusion-mri-magnitude-images|Joint Denoising of Diffusion MRI Magnitude Images]]''': This tool implements a penalized maximum likelihood estimation method for reducing noise in diffusion MRI magnitude images. * '''[[Resources/BrainSuiteSampleDataset|BrainSuite Sample Dataset]]:''' Mirror of sample dataset for !BrainSuite training. |
Resources: Tools and Utilities
Following are some software tools that we think may be useful. Please note that while we attempt to make sure software distributed here works as intended, this code is largely research code for which we do not have the resources to provide technical support.
BFC Correction tool: This tool allows user guided bias field correction by manually selecting points.
Matlab utility functions:: for processing data generated using BrainSuite and SVReg.
Prepare Fieldmap: A command line tool for converting scanner saved fieldmap to units of radians/sec.
Add sform matrix to NIfTI-1 files: This tool adds sform matrix to NIfTI header, if it is absent.
Joint Denoising of Diffusion MRI Magnitude Images: This tool implements a penalized maximum likelihood estimation method for reducing noise in diffusion MRI magnitude images.
BrainSuite Sample Dataset: Mirror of sample dataset for BrainSuite training.