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===== WEDNESDAY 18th ===== 5:30 – [''Global''] Reproductible processing pipelines and multiverses 8:30 – '''Registration & Continental Breakfast ''' 9:15 – Richard Leahy (University of Southern California): Opening of the LA Garden 9:30 – David Shattuck (University of California, Los Angeles): Introduction and Overview of Brainsuite 10:15 ''Coffee Break'' 10:30 – Anand Joshi (University of Southern California): Brainsuite Demo & Discussion 11:00 – Richard Leahy (University of Southern California): Introduction to EEG/MEG Analysis 11:45 – Cameron Sacks (Wearable Sensing): EEG Live Demo & Discussion 12:00 – ''Lunch Break'' 12:30–17:30 – [[https://neuroimage.usc.edu/brainstorm/WorkshopLA2023|Tutorial – Hands-On Brainstorm]] Raymundo Cassani (McGill University) Takfarinas Medani (University of Southern California) ''12:30–13:00 '' Onsite assistance in installing the material for the training session '' 13:00–13:30 ''Introduction to Brainstorm (lecture) '' 13:30–14:35 ''Loading anatomy and recordings '' Set anatomy '' '' Review Raw recordings'' '' Import events'' '' 14:35–15:35 ''Pre-processing '' Frequency filters '' '' Artefact detections'' '' Artifact correction with SSP'' '' 15:30–15:45 Coffee Break'' '' 15:45–16:20 Analysis sensor level'' '' Import recording'''' <<BR>>'' '' Review trials'' '' Trial averages'' '' 16:20–16:55 Source estimation'' '' Forward Model (aka Head model)'''''' '' Noise covariance matrix'' '' Source estimation (from EEG and MEG recording)'' '' 16:55–17:15 Analysis source level'' '' Cortex parcellations: Atlases and scouts'''''' '' Noise covariance matrix'' '' Source estimation (from EEG and MEG recording)'''' '' |
= CuttingGarden2023: Los Angeles Garden = <<HTML(<img align="right" alt="cutting_lax_logo.png" class="attachment" src="/brainstorm/WorkshopLA2023?action=AttachFile&do=get&target=cutting_lax_logo.png" title="cutting_lax_logo.png" style="width: 35%;">)>> |
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== WEDNESDAY 18th == '''5:30 –''' [''Global''] Reproductible processing pipelines and multiverses '''8:30 – '''[[https://neuroimage.usc.edu/resources/CuttingEEG2023finalSlides/Local-Program_LA.pdf|Registration & Continental Breakfast]] '''9:15 – Richard Leahy''' (University of Southern California): ''' [[https://neuroimage.usc.edu/resources/CuttingEEG2023finalSlides/WelcomeCuttingEEGLAGarden__intro_leahy.pdf|Opening of the LA Garden]]''' '''9:30 – David Shattuck '''(University of California, Los Angeles): . Introduction and Overview of Brainsuite '''10:15''' ''Coffee Break'' '''10:30 – Anand Joshi''' (University of Southern California): . [[https://neuroimage.usc.edu/resources/CuttingEEG2023finalSlides/BrainSuiteToolsGardens_joshi.pdf|Brainsuite Tools & Discussion]] '''11:00 – Richard Leahy''' (University of Southern California): . [[https://neuroimage.usc.edu/resources/CuttingEEG2023finalSlides/BrainstormEEGOverviewCuttingGardens2023_leahy.pdf|Introduction to EEG/MEG Analysis]] '''11:45 –''' '''Cameron Sacks''' (Wearable Sensing): . [[https://neuroimage.usc.edu/resources/CuttingEEG2023finalSlides/wearableSensig_Cameron_compressed.pdf|EEG Live Demo & Discussion]] '''12:00 – ''Lunch Break'' ''' '''12:30–17:30 ''' – [[https://neuroimage.usc.edu/brainstorm/WorkshopLA2023|Tutorial – Hands-On Brainstorm]] . '''Raymundo Cassani '''(McGill University) &''' Takfarinas Medani '''(University of Southern California) . '''12:30–13:00''' Onsite assistance in installing the material for the training session '''13:00–13:30 '''[[https://neuroimage.usc.edu/resources/CuttingEEG2023finalSlides/2023_lax_tm_bst.pdf|Introduction to Brainstorm (lecture)]] - [[https://www.youtube.com/watch?v=_h-X6GfxmpE|Youtube Video]] - '''13:30–14:35 Loading anatomy and recordings ''' . Set anatomy . Review Raw recordings . Import events '''14:35–15:35 Pre-processing ''' . Frequency filters . Artefact detections . Artifact correction with SSP '''15:30–15:45 Coffee Break ''' '''15:45–16:20 Analysis sensor level ''' . Import recording'' '' . ''Review trials '' . ''Trial averages '' '''''16:20–16:55 Source estimation ''' '' . ''Forward Model (aka Head model) '' . ''Noise covariance matrix '' . ''Source estimation (from EEG and MEG recording) '' '''''16:55–17:15 Analysis source level ''' '' . ''Cortex parcellations: Atlases and scouts '' . ''Noise covariance matrix '' . ''Source estimation (from EEG and MEG recording) '' |
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'' '' | '' '' |
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5:30 – [''Global''] Deep Neural Network (DNN) analysis for MEEG data | '''5:30 –''' [''Global''] Deep Neural Network (DNN) analysis for MEEG data '' '' |
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8:30 – ''' Continental Breakfast''' | '''8:30 –''' ''' Continental Breakfast''' '' '' |
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9:00 – 17:30 – [''Local''] Machine Learning and EEG | '''9:00 – 17:30 –''' [''Local''] Machine Learning and EEG '' '' |
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Session 1: Computational Tools and Pipelines for ML analysis; session chair: Richard Leahy | '''Session 1: Computational Tools and Pipelines for ML analysis; session chair: Richard Leahy.'' '' ''' |
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9:00–9:25- Arnaud Delorme (University of California, San Diego): “''Machine learning and the BIDS EEG data format”'' | . '''9:00–9:25- Arnaud Delorme '''(University of California, San Diego): “''[[https://neuroimage.usc.edu/resources/CuttingEEG2023finalSlides/BIDS_ml_usc_delorme.pdf|Machine learning and the BIDS EEG data format]]”'' . '''9:25–9:50- Tim Mullen''' (Intheon Labs):'' '' |
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9:25–9:50- Tim Mullen (Intheon Labs):'' “Creating Deployable Workflows for EEG Signal Processing and ML/DL Using NeuroPype”'' | . ''“Creating Deployable Workflows for EEG Signal Processing and ML/DL Using NeuroPype”'' '' '' . '''9:50–10:15''– ''Ivan Tashev''' (Microsoft Research)'':'' . '' [[https://neuroimage.usc.edu/resources/CuttingEEG2023finalSlides/2023_Garden_WorkloadEstimation_IvanTashev_final.pdf|“Workload estimation using brain- and bio- signals for adaptive training system”]]'' '' '' . '''10:15–10:40''– ''Bin He''' (Carnegie Mellon University)'':'' . '' “AI/ML Enhances Dynamic Brain Imaging from EEG/MEG”'' . . '''Coffee '''''' Break (10:40–11:00)''' '' '' |
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9:50–10:15''– ''Ivan Tashev (Microsoft Research)'': “Workload estimation using brain- and bio- signals for adaptive training system”'' | '''Session 2: Self Supervised Leaning; session chair: Takfarinas Medani '' '' ''' |
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10:15–10:40''– ''Bin He (Carnegie Mellon University)'': “AI/ML Enhances Dynamic Brain Imaging from EEG/MEG”'' | . '''11:00–11:25''– ''Dominique Duncan''' (University of Southern California)'':'' . '' [[https://neuroimage.usc.edu/resources/CuttingEEG2023finalSlides/Cutting_EEG_2023_Duncan.pdf|“Unsupervised Multivariate Time-Series Transformers for Seizure Identification on EEG”]]'' '' '' . '''11:25–11:50''– ''Wenhui Cui '''(University of Southern California)'':'' . '' [[https://neuroimage.usc.edu/resources/CuttingEEG2023finalSlides/eeg_foundation_model_talk_Cui.pdf|“Neuro-GPT: A Foundation Model Pretrained on Large-Scale EEG Data”]]'' |
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'''Coffee ''''''Break (10:40–11:00)''' | Lunch Break (12:00–13:00)''' '' '' ''' |
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Session 2: Self Supervised Leaning; session chair: Takfarinas Medani | '''Session 3: Machine Learning for brain computer interfaces; session chair: Shrikanth Narayanan '' '' ''' |
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11:00–11:25''– ''Dominique Duncan (University of Southern California)'': “Unsupervised Multivariate Time-Series Transformers for Seizure Identification on EEG”'' | . '''13:00–13:30- Alexander Silva '''(University of California, San Francisco): . [[https://neuroimage.usc.edu/resources/CuttingEEG2023finalSlides/USCsymposium_Alex_Silva.pdf|“A high performance neuroprosthesis for speech decoding and avatar control]]''[[https://neuroimage.usc.edu/resources/CuttingEEG2023finalSlides/USCsymposium_Alex_Silva.pdf|“]] '' . '''''13:30–14:00''''''''– ''Maryam Shanechi '''''(University of Southern California)'':'' '' ''' ''''' . ''“AI-powered next-generation neurotechnologies”'' '' '' '' ''' ''''' . '''14:00–14:30''– ''Ludovic Bellier '(University of California, Berkeley) '': '' '' ''''' . [[https://neuroimage.usc.edu/resources/CuttingEEG2023finalSlides/CuttingEEG20231029_LBellier.pdf|“Reconstructing Pink Floyd from human auditory cortex”]] |
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11:25–11:50''– ''Wenhui Cui (University of Southern California)'': “Neuro-GPT: A Foundation Model Pretrained on Large-Scale EEG Data”'' | '''Panel Discussion'' ''''' |
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''' Lunch ''''''Break (12:00–13:00)''' | . '''14:40–15:10''– Moderator: ''Shrikanth Narayanan and Kristina Lerman''' (University of Southern California)'':'' '' ''' ''''' . ''“The Role of Foundational Models in Spontaneous and Event-Related EEG“'' '' '' '' ''' ''''' |
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''' Session 3: Machine Learning for brain computer interfaces; session chair: Shrikanth Narayanan''' | Coffee Break(15:10–15:40) |
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13:00–13:30- Alexander Silva (University of California, San Francisco): “A high performance neuroprosthesis for speech decoding and avatar control''“'' | '''Session 4: Machine Learning for neurological disorders; session chair: Kristina Lerman''''' '' |
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13:30–14:00''– ''Maryam Shanechi (University of Southern California)'': “AI-powered next-generation neurotechnologies”'' | . 15:40–16:05''– ''Srikantan Nagarajan '(University of California, San Francisco)'':'' '' '' . ''[[https://neuroimage.usc.edu/resources/CuttingEEG2023finalSlides/USCTalk_Oct2023_v3_Sri.pdf|“Machine learning algorithms for electromagnetic brain imaging in dementia”]]'' '' '' '' '' . '''16:05–16:30''''''''– ''Dimitrios Pantazis''''' (Massachusetts Institute of Technology)'':'' '' ''' ''' . [[https://neuroimage.usc.edu/resources/CuttingEEG2023finalSlides/CuttingEEG_GardenLA2023_Pantazis.pdf|“Graph representation learning of MEG signals opens a window to aging trajectories and Alzheimer’s disease”]] . '''''16:30–16:55''– ''Jason da Silva Castanheira (McGill University)'':''''' '' ''' ''' . ''[[https://neuroimage.usc.edu/resources/CuttingEEG2023finalSlides/Cutting_Gardens_daSilvaCastanheira_short.pdf|“Inter-individual differences in neurophysiology vary with age and disease”]] '' ''' ''' |
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14:00–14:30''– ''Ludovic Bellier (University of California, Berkeley) '': “Reconstructing Pink Floyd from human auditory cortex”'' ''' Panel Discussion''' 14:40–15:10''– Moderator: ''Shrikanth Narayanan and Kristina Lerman (University of Southern California)'': “The Role of Foundational Models in Spontaneous and Event Related EEG“'' ''' Coffee ''''''Break(15:10–15:40)''' ''' Session 4: Machine Learning for neurological disorders; session chair: Kristina Lerman''' 15:40–16:05''– ''Srikantan Nagarajan (University of California, San Francisco)'': “Machine learning algorithms for electromagnetic brain imaging in dementia”'' 16:05–16:30''– ''Dimitrios Pantazis (Massachusetts Institute of Technology)'': “Graph representation learning of MEG signals opens a window to aging trajectories and Alzheimer’s disease”'' 16:30–16:55''– ''Jason da Silva Castanheira (McGill University)'': “Inter-individual differences in neurophysiology vary with age and disease”'' ''' Closing and final remarks''' |
'''Closing and final remarks''' |
CuttingGarden2023: Los Angeles Garden
WEDNESDAY 18th
5:30 – [Global] Reproductible processing pipelines and multiverses
8:30 – Registration & Continental Breakfast
9:15 – Richard Leahy (University of Southern California):
9:30 – David Shattuck (University of California, Los Angeles):
- Introduction and Overview of Brainsuite
10:15 Coffee Break
10:30 – Anand Joshi (University of Southern California):
11:00 – Richard Leahy (University of Southern California):
11:45 – Cameron Sacks (Wearable Sensing):
12:00 – Lunch Break
12:30–17:30 – Tutorial – Hands-On Brainstorm
Raymundo Cassani (McGill University) & Takfarinas Medani (University of Southern California)
12:30–13:00 Onsite assistance in installing the material for the training session
13:00–13:30 Introduction to Brainstorm (lecture) - Youtube Video -
13:30–14:35 Loading anatomy and recordings
- Set anatomy
- Review Raw recordings
- Import events
14:35–15:35 Pre-processing
- Frequency filters
- Artefact detections
- Artifact correction with SSP
15:30–15:45 Coffee Break
15:45–16:20 Analysis sensor level
Import recording
Review trials
Trial averages
16:20–16:55 Source estimation
Forward Model (aka Head model)
Noise covariance matrix
Source estimation (from EEG and MEG recording)
16:55–17:15 Analysis source level
Cortex parcellations: Atlases and scouts
Noise covariance matrix
Source estimation (from EEG and MEG recording)
THURSDAY 19th
5:30 – [Global] Deep Neural Network (DNN) analysis for MEEG data
8:30 – Continental Breakfast
9:00 – 17:30 – [Local] Machine Learning and EEG
Session 1: Computational Tools and Pipelines for ML analysis; session chair: Richard Leahy.
9:00–9:25- Arnaud Delorme (University of California, San Diego): “Machine learning and the BIDS EEG data format”
9:25–9:50- Tim Mullen (Intheon Labs):
“Creating Deployable Workflows for EEG Signal Processing and ML/DL Using NeuroPype”
9:50–10:15– Ivan Tashev (Microsoft Research):
“Workload estimation using brain- and bio- signals for adaptive training system”
10:15–10:40– Bin He (Carnegie Mellon University):
“AI/ML Enhances Dynamic Brain Imaging from EEG/MEG”
Coffee Break (10:40–11:00)
Session 2: Self Supervised Leaning; session chair: Takfarinas Medani
11:00–11:25– Dominique Duncan (University of Southern California):
“Unsupervised Multivariate Time-Series Transformers for Seizure Identification on EEG”
11:25–11:50– Wenhui Cui (University of Southern California):
“Neuro-GPT: A Foundation Model Pretrained on Large-Scale EEG Data”
Lunch Break (12:00–13:00)
Session 3: Machine Learning for brain computer interfaces; session chair: Shrikanth Narayanan
13:00–13:30- Alexander Silva (University of California, San Francisco):
“A high performance neuroprosthesis for speech decoding and avatar control“
13:30–14:00– Maryam Shanechi (University of Southern California):
“AI-powered next-generation neurotechnologies”
14:00–14:30– Ludovic Bellier '(University of California, Berkeley) :
Panel Discussion
14:40–15:10– Moderator: Shrikanth Narayanan and Kristina Lerman (University of Southern California):
“The Role of Foundational Models in Spontaneous and Event-Related EEG“
Coffee Break(15:10–15:40)
Session 4: Machine Learning for neurological disorders; session chair: Kristina Lerman
15:40–16:05– Srikantan Nagarajan '(University of California, San Francisco):
“Machine learning algorithms for electromagnetic brain imaging in dementia”
16:05–16:30– Dimitrios Pantazis (Massachusetts Institute of Technology):
16:30–16:55– Jason da Silva Castanheira (McGill University):
“Inter-individual differences in neurophysiology vary with age and disease”
Closing and final remarks