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===== CuttingGarden2023 Symposium: LA Garden Program ===== ===== WEDNESDAY 18th ===== |
= CuttingGarden2023: Los Angeles Garden = <<HTML(<img align="right" alt="cutting_lax_logo.png" class="attachment" src="/brainstorm/WorkshopLA2023?action=AttachFile&do=get&target=cutting_lax_logo.png" title="cutting_lax_logo.png" style="width: 35%;">)>> == WEDNESDAY 18th == |
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'''9:15 – ''' Richard Leahy (University of Southern California):'''[[https://neuroimage.usc.edu/resources/CuttingEEG2023finalSlides/WelcomeCuttingEEGLAGarden__intro_leahy.pdf|Opening of the LA Garden]]''' | '''9:15 – Richard Leahy''' (University of Southern California): |
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'''9:30 – ''' David Shattuck (University of California, Los Angeles): Introduction and Overview of Brainsuite | ''' [[https://neuroimage.usc.edu/resources/CuttingEEG2023finalSlides/WelcomeCuttingEEGLAGarden__intro_leahy.pdf|Opening of the LA Garden]]''' '''9:30 – David Shattuck '''(University of California, Los Angeles): . Introduction and Overview of Brainsuite |
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'''10:30 – '''Anand Joshi (University of Southern California): [[https://neuroimage.usc.edu/resources/CuttingEEG2023finalSlides/BrainSuiteToolsGardens_joshi.pdf|Brainsuite Tools & Discussion]] | '''10:30 – Anand Joshi''' (University of Southern California): |
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'''11:00 – '''Richard Leahy (University of Southern California): [[https://neuroimage.usc.edu/resources/CuttingEEG2023finalSlides/BrainstormEEGOverviewCuttingGardens2023_leahy.pdf|Introduction to EEG/MEG Analysis]] | . [[https://neuroimage.usc.edu/resources/CuttingEEG2023finalSlides/BrainSuiteToolsGardens_joshi.pdf|Brainsuite Tools & Discussion]] |
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'''11:45 –''' Cameron Sacks (Wearable Sensing): EEG Live Demo & Discussion | '''11:00 – Richard Leahy''' (University of Southern California): . [[https://neuroimage.usc.edu/resources/CuttingEEG2023finalSlides/BrainstormEEGOverviewCuttingGardens2023_leahy.pdf|Introduction to EEG/MEG Analysis]] '''11:45 –''' '''Cameron Sacks''' (Wearable Sensing): . [[https://neuroimage.usc.edu/resources/CuttingEEG2023finalSlides/wearableSensig_Cameron_compressed.pdf|EEG Live Demo & Discussion]] |
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. Raymundo Cassani (McGill University) & Takfarinas Medani (University of Southern California) | . '''Raymundo Cassani '''(McGill University) &''' Takfarinas Medani '''(University of Southern California) |
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'''13:00–13:30 '''[[https://neuroimage.usc.edu/resources/CuttingEEG2023finalSlides/2023_lax_tm_bst.pdf|Introduction to Brainstorm (lecture)]] | '''13:00–13:30 '''[[https://neuroimage.usc.edu/resources/CuttingEEG2023finalSlides/2023_lax_tm_bst.pdf|Introduction to Brainstorm (lecture)]] - [[https://www.youtube.com/watch?v=_h-X6GfxmpE|Youtube Video]] - |
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===== THURSDAY 19th ===== '' '' |
== THURSDAY 19th == |
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Session 1: Computational Tools and Pipelines for ML analysis; session chair: Richard Leahy.'' '' . '''9:00–9:25- Arnaud Delorme '''(University of California, San Diego): “''[[https://neuroimage.usc.edu/resources/CuttingEEG2023finalSlides/BIDS_ml_usc_delorme.pdf|Machine learning and the BIDS EEG data format]]”'' '' '' . '''9:25–9:50- Tim Mullen''' (Intheon Labs):'' “Creating Deployable Workflows for EEG Signal Processing and ML/DL Using NeuroPype”'' '' '' . '''9:50–10:15''– ''Ivan Tashev''' (Microsoft Research)'': [[https://neuroimage.usc.edu/resources/CuttingEEG2023finalSlides/2023_Garden_WorkloadEstimation_IvanTashev_final.pdf|“Workload estimation using brain- and bio- signals for adaptive training system”]]'' '' '' . '''10:15–10:40''– ''Bin He''' (Carnegie Mellon University)'': “AI/ML Enhances Dynamic Brain Imaging from EEG/MEG”'' . . '''Coffee '''''' Break (10:40–11:00)''' '' '' Session 2: Self Supervised Leaning; session chair: Takfarinas Medani '' '' . '''11:00–11:25''– ''Dominique Duncan''' (University of Southern California)'': [[https://neuroimage.usc.edu/resources/CuttingEEG2023finalSlides/Cutting_EEG_2023_Duncan.pdf|“Unsupervised Multivariate Time-Series Transformers for Seizure Identification on EEG”]]'' '' '' . '''11:25–11:50''– ''Wenhui Cui '''(University of Southern California)'': [[https://neuroimage.usc.edu/resources/CuttingEEG2023finalSlides/eeg_foundation_model_talk_Cui.pdf|“Neuro-GPT: A Foundation Model Pretrained on Large-Scale EEG Data”]]'' '' '' . '''' ''' |
'''Session 1: Computational Tools and Pipelines for ML analysis; session chair: Richard Leahy.'' '' ''' . '''9:00–9:25- Arnaud Delorme '''(University of California, San Diego): “''[[https://neuroimage.usc.edu/resources/CuttingEEG2023finalSlides/BIDS_ml_usc_delorme.pdf|Machine learning and the BIDS EEG data format]]”'' . '''9:25–9:50- Tim Mullen''' (Intheon Labs):'' '' . ''“Creating Deployable Workflows for EEG Signal Processing and ML/DL Using NeuroPype”'' '' '' . '''9:50–10:15''– ''Ivan Tashev''' (Microsoft Research)'':'' . '' [[https://neuroimage.usc.edu/resources/CuttingEEG2023finalSlides/2023_Garden_WorkloadEstimation_IvanTashev_final.pdf|“Workload estimation using brain- and bio- signals for adaptive training system”]]'' '' '' . '''10:15–10:40''– ''Bin He''' (Carnegie Mellon University)'':'' . '' “AI/ML Enhances Dynamic Brain Imaging from EEG/MEG”'' . . '''Coffee '''''' Break (10:40–11:00)''' '' '' '''Session 2: Self Supervised Leaning; session chair: Takfarinas Medani '' '' ''' . '''11:00–11:25''– ''Dominique Duncan''' (University of Southern California)'':'' . '' [[https://neuroimage.usc.edu/resources/CuttingEEG2023finalSlides/Cutting_EEG_2023_Duncan.pdf|“Unsupervised Multivariate Time-Series Transformers for Seizure Identification on EEG”]]'' '' '' . '''11:25–11:50''– ''Wenhui Cui '''(University of Southern California)'':'' . '' [[https://neuroimage.usc.edu/resources/CuttingEEG2023finalSlides/eeg_foundation_model_talk_Cui.pdf|“Neuro-GPT: A Foundation Model Pretrained on Large-Scale EEG Data”]]'' |
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Session 3: Machine Learning for brain computer interfaces; session chair: Shrikanth Narayanan''' '' '' ''' | '''Session 3: Machine Learning for brain computer interfaces; session chair: Shrikanth Narayanan '' '' ''' |
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. 13:00–13:30- Alexander Silva''' (University of California, San Francisco): [[https://neuroimage.usc.edu/resources/CuttingEEG2023finalSlides/USCsymposium_Alex_Silva.pdf|“A high performance neuroprosthesis for speech decoding and avatar control]]''[[https://neuroimage.usc.edu/resources/CuttingEEG2023finalSlides/USCsymposium_Alex_Silva.pdf|“]]'' '' '' ''' . 13:30–14:00''– ''Maryam Shanechi''' (University of Southern California)'': “AI-powered next-generation neurotechnologies”'' '' '' ''' . 14:00–14:30''– ''Ludovic Bellier''' (University of California, Berkeley) '': [[https://neuroimage.usc.edu/resources/CuttingEEG2023finalSlides/CuttingEEG20231029_LBellier.pdf|“Reconstructing Pink Floyd from human auditory cortex”]]'' '' '' ''' |
. '''13:00–13:30- Alexander Silva '''(University of California, San Francisco): . [[https://neuroimage.usc.edu/resources/CuttingEEG2023finalSlides/USCsymposium_Alex_Silva.pdf|“A high performance neuroprosthesis for speech decoding and avatar control]]''[[https://neuroimage.usc.edu/resources/CuttingEEG2023finalSlides/USCsymposium_Alex_Silva.pdf|“]] '' . '''''13:30–14:00''''''''– ''Maryam Shanechi '''''(University of Southern California)'':'' '' ''' ''''' . ''“AI-powered next-generation neurotechnologies”'' '' '' '' ''' ''''' . '''14:00–14:30''– ''Ludovic Bellier '(University of California, Berkeley) '': '' '' ''''' . [[https://neuroimage.usc.edu/resources/CuttingEEG2023finalSlides/CuttingEEG20231029_LBellier.pdf|“Reconstructing Pink Floyd from human auditory cortex”]] |
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Panel Discussion''' '' '' ''' | '''Panel Discussion'' ''''' |
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. 14:40–15:10''–''' Moderator: ''''''''Shrikanth Narayanan and Kristina Lerman (University of Southern California)'': “The Role of Foundational Models in Spontaneous and Event-Related EEG“'' '' '' ''' | . '''14:40–15:10''– Moderator: ''Shrikanth Narayanan and Kristina Lerman''' (University of Southern California)'':'' '' ''' ''''' . ''“The Role of Foundational Models in Spontaneous and Event-Related EEG“'' '' '' '' ''' ''''' |
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Coffee Break(15:10–15:40)''' '' '' ''' | Coffee Break(15:10–15:40) |
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Session 4: Machine Learning for neurological disorders; session chair: Kristina Lerman''' '' '' ''' | '''Session 4: Machine Learning for neurological disorders; session chair: Kristina Lerman''''' '' |
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. 15:40–16:05''– ''Srikantan Nagarajan''' (University of California, San Francisco)'': [[https://neuroimage.usc.edu/resources/CuttingEEG2023finalSlides/USCTalk_Oct2023_v3_Sri.pdf|“Machine learning algorithms for electromagnetic brain imaging in dementia”]]'' '' '' ''' . 16:05–16:30''– ''Dimitrios Pantazis '''(Massachusetts Institute of Technology)'': '' ''' |
. 15:40–16:05''– ''Srikantan Nagarajan '(University of California, San Francisco)'':'' '' '' . ''[[https://neuroimage.usc.edu/resources/CuttingEEG2023finalSlides/USCTalk_Oct2023_v3_Sri.pdf|“Machine learning algorithms for electromagnetic brain imaging in dementia”]]'' '' '' '' '' . '''16:05–16:30''''''''– ''Dimitrios Pantazis''''' (Massachusetts Institute of Technology)'':'' '' ''' ''' . [[https://neuroimage.usc.edu/resources/CuttingEEG2023finalSlides/CuttingEEG_GardenLA2023_Pantazis.pdf|“Graph representation learning of MEG signals opens a window to aging trajectories and Alzheimer’s disease”]] . '''''16:30–16:55''– ''Jason da Silva Castanheira (McGill University)'':''''' '' ''' ''' . ''[[https://neuroimage.usc.edu/resources/CuttingEEG2023finalSlides/Cutting_Gardens_daSilvaCastanheira_short.pdf|“Inter-individual differences in neurophysiology vary with age and disease”]] '' ''' ''' |
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'''''[[https://neuroimage.usc.edu/resources/CuttingEEG2023finalSlides/CuttingEEG_GardenLA2023_Pantazis.pdf|“Graph representation learning of MEG signals opens a window to aging trajectories and Alzheimer’s disease”]] '' ''' . ''''' '' ''' . 16:30–16:55''– ''Jason da Silva Castanheira''' (McGill University)'': [[https://neuroimage.usc.edu/resources/CuttingEEG2023finalSlides/Cutting_Gardens_daSilvaCastanheira_short.pdf|“Inter-individual differences in neurophysiology vary with age and disease”]]'' '' '' ''' Closing and final remarks''' '' '' ''' |
'''Closing and final remarks''' |
CuttingGarden2023: Los Angeles Garden
WEDNESDAY 18th
5:30 – [Global] Reproductible processing pipelines and multiverses
8:30 – Registration & Continental Breakfast
9:15 – Richard Leahy (University of Southern California):
9:30 – David Shattuck (University of California, Los Angeles):
- Introduction and Overview of Brainsuite
10:15 Coffee Break
10:30 – Anand Joshi (University of Southern California):
11:00 – Richard Leahy (University of Southern California):
11:45 – Cameron Sacks (Wearable Sensing):
12:00 – Lunch Break
12:30–17:30 – Tutorial – Hands-On Brainstorm
Raymundo Cassani (McGill University) & Takfarinas Medani (University of Southern California)
12:30–13:00 Onsite assistance in installing the material for the training session
13:00–13:30 Introduction to Brainstorm (lecture) - Youtube Video -
13:30–14:35 Loading anatomy and recordings
- Set anatomy
- Review Raw recordings
- Import events
14:35–15:35 Pre-processing
- Frequency filters
- Artefact detections
- Artifact correction with SSP
15:30–15:45 Coffee Break
15:45–16:20 Analysis sensor level
Import recording
Review trials
Trial averages
16:20–16:55 Source estimation
Forward Model (aka Head model)
Noise covariance matrix
Source estimation (from EEG and MEG recording)
16:55–17:15 Analysis source level
Cortex parcellations: Atlases and scouts
Noise covariance matrix
Source estimation (from EEG and MEG recording)
THURSDAY 19th
5:30 – [Global] Deep Neural Network (DNN) analysis for MEEG data
8:30 – Continental Breakfast
9:00 – 17:30 – [Local] Machine Learning and EEG
Session 1: Computational Tools and Pipelines for ML analysis; session chair: Richard Leahy.
9:00–9:25- Arnaud Delorme (University of California, San Diego): “Machine learning and the BIDS EEG data format”
9:25–9:50- Tim Mullen (Intheon Labs):
“Creating Deployable Workflows for EEG Signal Processing and ML/DL Using NeuroPype”
9:50–10:15– Ivan Tashev (Microsoft Research):
“Workload estimation using brain- and bio- signals for adaptive training system”
10:15–10:40– Bin He (Carnegie Mellon University):
“AI/ML Enhances Dynamic Brain Imaging from EEG/MEG”
Coffee Break (10:40–11:00)
Session 2: Self Supervised Leaning; session chair: Takfarinas Medani
11:00–11:25– Dominique Duncan (University of Southern California):
“Unsupervised Multivariate Time-Series Transformers for Seizure Identification on EEG”
11:25–11:50– Wenhui Cui (University of Southern California):
“Neuro-GPT: A Foundation Model Pretrained on Large-Scale EEG Data”
Lunch Break (12:00–13:00)
Session 3: Machine Learning for brain computer interfaces; session chair: Shrikanth Narayanan
13:00–13:30- Alexander Silva (University of California, San Francisco):
“A high performance neuroprosthesis for speech decoding and avatar control“
13:30–14:00– Maryam Shanechi (University of Southern California):
“AI-powered next-generation neurotechnologies”
14:00–14:30– Ludovic Bellier '(University of California, Berkeley) :
Panel Discussion
14:40–15:10– Moderator: Shrikanth Narayanan and Kristina Lerman (University of Southern California):
“The Role of Foundational Models in Spontaneous and Event-Related EEG“
Coffee Break(15:10–15:40)
Session 4: Machine Learning for neurological disorders; session chair: Kristina Lerman
15:40–16:05– Srikantan Nagarajan '(University of California, San Francisco):
“Machine learning algorithms for electromagnetic brain imaging in dementia”
16:05–16:30– Dimitrios Pantazis (Massachusetts Institute of Technology):
16:30–16:55– Jason da Silva Castanheira (McGill University):
“Inter-individual differences in neurophysiology vary with age and disease”
Closing and final remarks