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| ===== CuttingGarden2023 Symposium: LA Garden Program ===== | |
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| . 5:30 – [''Global''] Reproductible processing pipelines and multiverses 8:30 – '''Registration & Continental Breakfast ''' 9:15 – Richard Leahy (University of Southern California): Opening of the LA Garden 9:30 – David Shattuck (University of California, Los Angeles): Introduction and Overview of Brainsuite |
'''5:30 –''' [''Global''] Reproductible processing pipelines and multiverses |
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| 10:15 ''Coffee Break'' | '''8:30 – '''[[https://neuroimage.usc.edu/resources/CuttingEEG2023finalSlides/Local-Program_LA.pdf|Registration & Continental Breakfast]] |
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| 10:30 – Anand Joshi (University of Southern California): Brainsuite Demo & Discussion | '''9:15 – ''' Richard Leahy (University of Southern California):'''[[https://neuroimage.usc.edu/resources/CuttingEEG2023finalSlides/WelcomeCuttingEEGLAGarden__intro_leahy.pdf|Opening of the LA Garden]]''' |
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| 11:00 – Richard Leahy (University of Southern California): Introduction to EEG/MEG Analysis | '''9:30 – ''' David Shattuck (University of California, Los Angeles): Introduction and Overview of Brainsuite |
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| 11:45 – Cameron Sacks (Wearable Sensing): EEG Live Demo & Discussion | '''10:15''' ''Coffee Break'' |
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| 12:00 – ''Lunch Break'' | '''10:30 – '''Anand Joshi (University of Southern California): [[https://neuroimage.usc.edu/resources/CuttingEEG2023finalSlides/BrainSuiteToolsGardens_joshi.pdf|Brainsuite Tools & Discussion]] |
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| 12:30–17:30 – [[https://neuroimage.usc.edu/brainstorm/WorkshopLA2023|Tutorial – Hands-On Brainstorm]] | '''11:00 – '''Richard Leahy (University of Southern California): [[https://neuroimage.usc.edu/resources/CuttingEEG2023finalSlides/BrainstormEEGOverviewCuttingGardens2023_leahy.pdf|Introduction to EEG/MEG Analysis]] |
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| . Raymundo Cassani (McGill University) Takfarinas Medani (University of Southern California) ''12:30–13:00 '' Onsite assistance in installing the material for the training session |
'''11:45 –''' Cameron Sacks (Wearable Sensing): EEG Live Demo & Discussion |
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| '' 13:00–13:30 ''Introduction to Brainstorm (lecture) | '''12:00 – ''Lunch Break'' ''' |
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| '' 13:30–14:35 ''Loading anatomy and recordings | '''12:30–17:30 ''' – [[https://neuroimage.usc.edu/brainstorm/WorkshopLA2023|Tutorial – Hands-On Brainstorm]] |
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| '' Set anatomy '' | . Raymundo Cassani (McGill University) & Takfarinas Medani (University of Southern California) . |
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| '' Review Raw recordings'' | '''12:30–13:00''' Onsite assistance in installing the material for the training session |
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| '' Import events'' | '''13:00–13:30 '''[[https://neuroimage.usc.edu/resources/CuttingEEG2023finalSlides/2023_lax_tm.pptx|Introduction to Brainstorm (lecture)]] |
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| '' 14:35–15:35 ''Pre-processing | '''13:30–14:35 Loading anatomy and recordings ''' |
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| '' Frequency filters '' | . Set anatomy |
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| '' Artefact detections'' | . Review Raw recordings |
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| '' Artifact correction with SSP'' | . Import events |
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| '' 15:30–15:45 Coffee Break'' | '''14:35–15:35 Pre-processing ''' |
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| '' 15:45–16:20 Analysis sensor level'' | . Frequency filters |
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| '' Import recording'''' <<BR>>'''''''' ''' | . Artefact detections |
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| ''''' Review trials'' ''' | . Artifact correction with SSP |
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| ''''' Trial averages'' ''' | '''15:30–15:45 Coffee Break ''' |
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| ''''' 16:20–16:55 Source estimation'' ''' | '''15:45–16:20 Analysis sensor level ''' |
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| ''''' Forward Model (aka Head model)'''''''''' ''''' | . Import recording'' '' |
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| ''' Noise covariance matrix'' ''''' | . ''Review trials '' |
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| ''' Source estimation (from EEG and MEG recording)'' ''''' | . ''Trial averages '' |
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| ''' 16:55–17:15 Analysis source level'' ''''' | '''''16:20–16:55 Source estimation ''' '' |
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| ''' Cortex parcellations: Atlases and scouts'''''' ''' | . ''Forward Model (aka Head model) '' |
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| ''''' Noise covariance matrix'' ''' | . ''Noise covariance matrix '' |
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| ''''' Source estimation (from EEG and MEG recording)'''''''' '' | . ''Source estimation (from EEG and MEG recording) '' '''''16:55–17:15 Analysis source level ''' '' . ''Cortex parcellations: Atlases and scouts '' . ''Noise covariance matrix '' . ''Source estimation (from EEG and MEG recording) '' |
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| '' '' | '' '' |
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| 5:30 – [''Global''] Deep Neural Network (DNN) analysis for MEEG data | 5:30 – [''Global''] Deep Neural Network (DNN) analysis for MEEG data '' '' |
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| 8:30 – ''' Continental Breakfast''' | 8:30 – ''' Continental Breakfast''' '' '' |
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| 9:00 – 17:30 – [''Local''] Machine Learning and EEG | 9:00 – 17:30 – [''Local''] Machine Learning and EEG '' '' |
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| . Session 1: Computational Tools and Pipelines for ML analysis; session chair: Richard Leahy . 9:00–9:25- Arnaud Delorme (University of California, San Diego): “''Machine learning and the BIDS EEG data format”'' 9:25–9:50- Tim Mullen (Intheon Labs):'' “Creating Deployable Workflows for EEG Signal Processing and ML/DL Using NeuroPype”'' 9:50–10:15''– ''Ivan Tashev (Microsoft Research)'': “Workload estimation using brain- and bio- signals for adaptive training system”'' 10:15–10:40''– ''Bin He (Carnegie Mellon University)'': “AI/ML Enhances Dynamic Brain Imaging from EEG/MEG”'' '''Coffee ''''''Break (10:40–11:00)''' Session 2: Self Supervised Leaning; session chair: Takfarinas Medani . 11:00–11:25''– ''Dominique Duncan (University of Southern California)'': “Unsupervised Multivariate Time-Series Transformers for Seizure Identification on EEG”'' 11:25–11:50''– ''Wenhui Cui (University of Southern California)'': “Neuro-GPT: A Foundation Model Pretrained on Large-Scale EEG Data”'' |
. Session 1: Computational Tools and Pipelines for ML analysis; session chair: Richard Leahy.'' '' . 9:00–9:25- Arnaud Delorme (University of California, San Diego): “''[[https://neuroimage.usc.edu/resources/CuttingEEG2023finalSlides/BIDS_ml_usc_delorme.pdf|Machine learning and the BIDS EEG data format]]”'' '' '' . 9:25–9:50- Tim Mullen (Intheon Labs):'' “Creating Deployable Workflows for EEG Signal Processing and ML/DL Using NeuroPype”'' '' '' . 9:50–10:15''– ''Ivan Tashev (Microsoft Research)'': [[https://neuroimage.usc.edu/resources/CuttingEEG2023finalSlides/2023_Garden_WorkloadEstimation_IvanTashev_final.pdf|“Workload estimation using brain- and bio- signals for adaptive training system”]]'' '' '' . 10:15–10:40''– ''Bin He (Carnegie Mellon University)'': “AI/ML Enhances Dynamic Brain Imaging from EEG/MEG”'' '''Coffee '''''' Break (10:40–11:00)''' '' '' Session 2: Self Supervised Leaning; session chair: Takfarinas Medani '' '' . 11:00–11:25''– ''Dominique Duncan (University of Southern California)'': [[https://neuroimage.usc.edu/resources/CuttingEEG2023finalSlides/Cutting_EEG_2023_Duncan.pdf|“Unsupervised Multivariate Time-Series Transformers for Seizure Identification on EEG”]]'' '' '' . 11:25–11:50''– ''Wenhui Cui (University of Southern California)'': [[https://neuroimage.usc.edu/resources/CuttingEEG2023finalSlides/eeg_foundation_model_talk_Cui.pdf|“Neuro-GPT: A Foundation Model Pretrained on Large-Scale EEG Data”]]'' '' '' |
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| ''' Lunch ''''''Break (12:00–13:00)''' | ''' Lunch ''''''Break (12:00–13:00)''' '' '' |
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| ''' Session 3: Machine Learning for brain computer interfaces; session chair: Shrikanth Narayanan''' | ''' Session 3: Machine Learning for brain computer interfaces; session chair: Shrikanth Narayanan''' '' '' |
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| . 13:00–13:30- Alexander Silva (University of California, San Francisco): “A high performance neuroprosthesis for speech decoding and avatar control''“'' 13:30–14:00''– ''Maryam Shanechi (University of Southern California)'': “AI-powered next-generation neurotechnologies”'' 14:00–14:30''– ''Ludovic Bellier (University of California, Berkeley) '': “Reconstructing Pink Floyd from human auditory cortex”'' |
. 13:00–13:30- Alexander Silva (University of California, San Francisco): [[https://neuroimage.usc.edu/resources/CuttingEEG2023finalSlides/USCsymposium_Alex_Silva.pdf|“A high performance neuroprosthesis for speech decoding and avatar control]]''[[https://neuroimage.usc.edu/resources/CuttingEEG2023finalSlides/USCsymposium_Alex_Silva.pdf|“]]'' '' '' . 13:30–14:00''– ''Maryam Shanechi (University of Southern California)'': “AI-powered next-generation neurotechnologies”'' '' '' . 14:00–14:30''– ''Ludovic Bellier (University of California, Berkeley) '': [[https://neuroimage.usc.edu/resources/CuttingEEG2023finalSlides/CuttingEEG20231029_LBellier.pdf|“Reconstructing Pink Floyd from human auditory cortex”]]'' '' '' |
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| ''' Panel Discussion''' | ''' Panel Discussion''' '' '' |
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| . 14:40–15:10''– Moderator: ''Shrikanth Narayanan and Kristina Lerman (University of Southern California)'': “The Role of Foundational Models in Spontaneous and Event Related EEG“'' | . 14:40–15:10''– Moderator: ''Shrikanth Narayanan and Kristina Lerman (University of Southern California)'': “The Role of Foundational Models in Spontaneous and Event Related EEG“'' '' '' |
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| ''' Coffee ''''''Break(15:10–15:40)''' | ''' Coffee ''''''Break(15:10–15:40)''' '' '' |
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| ''' Session 4: Machine Learning for neurological disorders; session chair: Kristina Lerman''' | ''' Session 4: Machine Learning for neurological disorders; session chair: Kristina Lerman''' '' '' |
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| . 15:40–16:05''– ''Srikantan Nagarajan (University of California, San Francisco)'': “Machine learning algorithms for electromagnetic brain imaging in dementia”'' 16:05–16:30''– ''Dimitrios Pantazis (Massachusetts Institute of Technology)'': “Graph representation learning of MEG signals opens a window to aging trajectories and Alzheimer’s disease”'' 16:30–16:55''– ''Jason da Silva Castanheira (McGill University)'': “Inter-individual differences in neurophysiology vary with age and disease”'' |
. 15:40–16:05''– ''Srikantan Nagarajan (University of California, San Francisco)'': [[https://neuroimage.usc.edu/resources/CuttingEEG2023finalSlides/USCTalk_Oct2023_v3_Sri.pdf|“Machine learning algorithms for electromagnetic brain imaging in dementia”]]'' '' '' . 16:05–16:30''– ''Dimitrios Pantazis (Massachusetts Institute of Technology)'': “Graph representation learning of MEG signals opens a window to aging trajectories and Alzheimer’s disease”'' '' '' . 16:30–16:55''– ''Jason da Silva Castanheira (McGill University)'': [[https://neuroimage.usc.edu/resources/CuttingEEG2023finalSlides/Cutting_Gardens_daSilvaCastanheira_short.pdf|“Inter-individual differences in neurophysiology vary with age and disease”]]'' '' '' |
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| ''' Closing and final remarks''' | ''' Closing and final remarks''' '' '' |
CuttingGarden2023 Symposium: LA Garden Program
WEDNESDAY 18th
5:30 – [Global] Reproductible processing pipelines and multiverses
8:30 – Registration & Continental Breakfast
9:15 – Richard Leahy (University of Southern California):Opening of the LA Garden
9:30 – David Shattuck (University of California, Los Angeles): Introduction and Overview of Brainsuite
10:15 Coffee Break
10:30 – Anand Joshi (University of Southern California): Brainsuite Tools & Discussion
11:00 – Richard Leahy (University of Southern California): Introduction to EEG/MEG Analysis
11:45 – Cameron Sacks (Wearable Sensing): EEG Live Demo & Discussion
12:00 – Lunch Break
12:30–17:30 – Tutorial – Hands-On Brainstorm
Raymundo Cassani (McGill University) & Takfarinas Medani (University of Southern California)
12:30–13:00 Onsite assistance in installing the material for the training session
13:00–13:30 Introduction to Brainstorm (lecture)
13:30–14:35 Loading anatomy and recordings
- Set anatomy
- Review Raw recordings
- Import events
14:35–15:35 Pre-processing
- Frequency filters
- Artefact detections
- Artifact correction with SSP
15:30–15:45 Coffee Break
15:45–16:20 Analysis sensor level
Import recording
Review trials
Trial averages
16:20–16:55 Source estimation
Forward Model (aka Head model)
Noise covariance matrix
Source estimation (from EEG and MEG recording)
16:55–17:15 Analysis source level
Cortex parcellations: Atlases and scouts
Noise covariance matrix
Source estimation (from EEG and MEG recording)
THURSDAY 19th
5:30 – [Global] Deep Neural Network (DNN) analysis for MEEG data
8:30 – Continental Breakfast
9:00 – 17:30 – [Local] Machine Learning and EEG
Session 1: Computational Tools and Pipelines for ML analysis; session chair: Richard Leahy.
9:00–9:25- Arnaud Delorme (University of California, San Diego): “Machine learning and the BIDS EEG data format”
9:25–9:50- Tim Mullen (Intheon Labs): “Creating Deployable Workflows for EEG Signal Processing and ML/DL Using NeuroPype”
9:50–10:15– Ivan Tashev (Microsoft Research): “Workload estimation using brain- and bio- signals for adaptive training system”
10:15–10:40– Bin He (Carnegie Mellon University): “AI/ML Enhances Dynamic Brain Imaging from EEG/MEG” Coffee Break (10:40–11:00)
Session 2: Self Supervised Leaning; session chair: Takfarinas Medani
11:00–11:25– Dominique Duncan (University of Southern California): “Unsupervised Multivariate Time-Series Transformers for Seizure Identification on EEG”
11:25–11:50– Wenhui Cui (University of Southern California): “Neuro-GPT: A Foundation Model Pretrained on Large-Scale EEG Data”
Lunch Break (12:00–13:00)
Session 3: Machine Learning for brain computer interfaces; session chair: Shrikanth Narayanan
13:00–13:30- Alexander Silva (University of California, San Francisco): “A high performance neuroprosthesis for speech decoding and avatar control“
13:30–14:00– Maryam Shanechi (University of Southern California): “AI-powered next-generation neurotechnologies”
14:00–14:30– Ludovic Bellier (University of California, Berkeley) : “Reconstructing Pink Floyd from human auditory cortex”
Panel Discussion
14:40–15:10– Moderator: Shrikanth Narayanan and Kristina Lerman (University of Southern California): “The Role of Foundational Models in Spontaneous and Event Related EEG“
Coffee Break(15:10–15:40)
Session 4: Machine Learning for neurological disorders; session chair: Kristina Lerman
15:40–16:05– Srikantan Nagarajan (University of California, San Francisco): “Machine learning algorithms for electromagnetic brain imaging in dementia”
16:05–16:30– Dimitrios Pantazis (Massachusetts Institute of Technology): “Graph representation learning of MEG signals opens a window to aging trajectories and Alzheimer’s disease”
16:30–16:55– Jason da Silva Castanheira (McGill University): “Inter-individual differences in neurophysiology vary with age and disease”
Closing and final remarks