Publications

Reference article (to cite in your publications featuring Brainstorm: thank you!)

Tadel F, Baillet S, Mosher JC, Pantazis D, Leahy RM (2011) Brainstorm: A User-Friendly Application for MEG/EEG Analysis, Computational Intelligence and Neuroscience, vol. 2011, Article ID 879716, 13 pages, 2011. doi:10.1155/2011/879716 [ html, pdf ]

See also: How to cite Brainstorm.

Presence in conferences, workshops, seminars...

Journal Publications from Brainstorm Users

2012

  1. Mario Rosanova, Olivia Gosseries, Silvia Casarotto, Mélanie Boly, Adenauer G. Casali, Marie-Aurélie Bruno, Maurizio Mariotti, Pierre Boveroux, Giulio Tononi, Steven Laureys, and Marcello Massimini, Recovery of cortical effective connectivity and recovery of consciousness in vegetative patients, Brain, first published online January 5, 2012 doi:10.1093/brain/awr340

2011

  1. Besserve M, Martinerie J, Garnero L (2011)
    "Improving quantification of functional networks with EEG inverse problem: evidence from a decoding point of view", Neuroimage, 55(4):1536-47

  2. Campi C, Pascarella A, Sorrentino A, Piana M (2011)
    "Highly Automated Dipole EStimation (HADES)", Comput Intell Neurosci, 2011:982185

  3. Casarotto S, Määttä S, Herukka SK, Pigorini A, Napolitani M, Gosseries O, Niskanen E, Könönen M, Mervaala E, Rosanova M, Soininen H, Massimini M (2011), "Transcranial magnetic stimulation-evoked EEG/cortical potentials in physiological and pathological aging", Neuroreport, 22(12):592-7

  4. Cheng H, Zhang XT, Yan Hao, Bai LJ, Ai L, Wang FB, You YB, Chen P, Wang BG (2011)
    "Differential temporal neural responses of pain-related regions by acupuncture at acupoint ST36: a magnetoencephalography study", Chinese Medical Journal, 124(8):1229-1234

  5. Cona F, Zavaglia M, Massimini M, Rosanova M, Ursino M., A neural mass model of interconnected regions simulates rhythm propagation observed via TMS-EEG. Neuroimage. 2011 Aug 1;57(3):1045-58. Epub 2011 May 11.

  6. Cottereau B, Lorenceau J, Gramfort A, Clerc M, Thirion B, Baillet S (2011)
    "Phase delays within visual cortex shape the response to steady-state visual stimulation," Neuroimage, 54(3):1919-29

  7. Darvas F, Scherer R, Ojemann JG, Rao RP, Miller KJ, Sorensen LB (2011)
    "High gamma mapping using EEG", Neuroimage, 49(1):930-8

  8. Furl N, Kumar S, Alter K, Durrant S, Shawe-Taylor J, Griffiths TD (2011)
    "Neural prediction of higher-order auditory sequence statistics," Neuroimage, 54(3):2267-77

  9. Gamond L, George N, Lemaréchal JD, Hugueville L, Adam C, Tallon-Baudry C (2011), "Early influence of prior experience on face perception", Neuroimage, 54(2):1415-26

  10. Hagler, D. J. and Dale, A. M. (2011), Improved method for retinotopy constrained source estimation of visual-evoked responses. Human Brain Mapping. doi: 10.1002/hbm.21461

  11. Jerbi K, Vidal JR, Mattout J, et al. (2011)
    "Inferring hand movement kinematics from MEG, EEG and intracranial EEG: From brain-machine interfaces to motor rehabilitation," IRBM, 32(1):8-18

  12. Khan S, Lefevre J, Ammari H, Baillet S (2011)
    "Feature detection and tracking in optical flow on non-flat manifolds," Pattern Recognition Letters, 32(15):2047-2052

  13. Lalancette M, Quraan M, Cheyne D (2011)
    "Evaluation of multiple-sphere head models for MEG source localization," Phys Med Biol, 56(17):5621-35

  14. Katia Lehongre, Franck Ramus, Nadège Villiermet, Denis Schwartz, Anne-Lise Giraud, Altered Low-Gamma Sampling in Auditory Cortex Accounts for the Three Main Facets of Dyslexia, Neuron, Volume 72, Issue 6, 22 December 2011, Pages 1080-1090, ISSN 0896-6273, 10.1016/j.neuron.2011.11.002.

  15. L. Lorenzo-López, R. Gutiérrez, S. Moratti, F. Maestú, F. Cadaveira, E. Amenedo, Age-related occipito-temporal hypoactivation during visual search: Relationships between mN2pc sources and performance, Neuropsychologia, Volume 49, Issue 5, April 2011, Pages 858–865 Marti S, Sigman E, Dehaene S (2011)
    "A shared cortical bottleneck underlying Attentional Blink and Psychological Refractory Period", Neuroimage,

  16. Mitchell DJ, Cusack R (2011)
    "The temporal evolution of electromagnetic markers sensitive to the capacity limits of visual short-term memory", Front Hum Neurosci. 2011 Feb 15;5:18

  17. Michael Niedeggen, Lars Michael, Guido Hesselmann, Closing the Gates to Consciousness: Distractors Activate a Central Inhibition Process , Journal of Cognitive Neuroscience : 1-11.

  18. Simpson GV, Weber DL, Dale CL, Pantazis D, Bressler SL, Leahy RM, Luks TL (2011), "Dynamic Activation of Frontal, Parietal, and Sensory Regions Underlying Anticipatory Visual Spatial Attention," J Neurosci, 31(39):13880-13889

  19. Sockeel S, Schwartz D, Martinerie J, Benali H, Garnero L (2011), "Detection of functional networks in EEG using spatial independent component analysis," IRBM, 32(1):Pages 35-41

  20. Solesio-Jofre E, Lorenzo-López L, Gutiérrez R, López-Frutos JM, Ruiz-Vargas JM, Maestú F (2011), "Age effects on retroactive interference during working memory maintenance", Biol Psychol, 88(1):72-82

  21. Sudre G, Parkkonen L, Bock E, Baillet S, Wang W, Weber DJ (2011)
    "rtMEG: A Real-Time Software Interface for Magnetoencephalography," Comput Intell Neurosci, vol. 2011

  22. Tallon-Baudry C , Meyniel F , Bourgeois-Gironde S , 2011 Fast and Automatic Activation of an Abstract Representation of Money in the Human Ventral Visual Pathway. PLoS ONE 6(11): e28229. doi:10.1371/journal.pone.0028229

  23. Vistoli D, Brunet-Gouet E, Lemoalle A, Hardy-Baylé MC, Passerieux C (2011)
    "Abnormal temporal and parietal magnetic activations during the early stages of theory of mind in schizophrenic patients", Soc Neurosci, 6(3):316-26

  24. Vistoli D, Passerieux C, Houze B, Hardy-Baylé MC, Brunet-Gouet E (2011), "Neural basis of semantic priming in schizophrenia during a lexical decision task: a magneto-encephalography study," Schizophr Res, 130(1-3):114-22

  25. Damien Vistoli, Eric Brunet-Gouet, Emilie Baup-Bobin, Marie-Christine Hardy-Bayle, Christine Passerieux, Anatomical and temporal architecture of theory of mind: A MEG insight into the early stages, Neuroimage, 54(2), pp: 1406–1414

  26. Catherine Wacongne, Etienne Labyt, Virginie van Wassenhove, Tristan Bekinschtein, Lionel Naccache, and Stanislas Dehaene, PNAS, December 20, 2011 vol. 108 no. 51 20754-20759

  27. Evidence for a hierarchy of predictions and prediction errors in human cortexZamrini E, Maestu F, Pekkonen E, et al. (2011)
    "Magnetoencephalography as a Putative Biomarker for Alzheimer's Disease," International Journal of Alzheimer's Disease, 2011, Article ID 280289

  28. Zerouali Y, Herry C, Jemel B, Lina J-M., Localization of synchronous cortical neural sources, IEEE Trans Biomed Eng. 2011

  29. Zvyagintsev M, Nikolaev AR, Sachs O, Mathiak K (2011)
    "Early attention modulates perceptual interpretation of multisensory stimuli", Neuroreport, 22(12):586-91

2010

2009

2008

2007

2006

2005

2004

Publications on Brainstorm's code

2011

2000-2010

1990-2000

Other

References

Useful, mostly technical, background reading:

[1] S Baillet, JC Mosher, and RM Leahy, "Electromagnetic brain mapping," IEEE Signal processing magazine, vol. 18, pp. 14-30, 2001.

[2] M Huang, J Mosher, and R Leahy, "A sensor-weighted overlapping-sphere head model and exhaustive head model comparison for MEG," Phys. Med. Biol., vol. 44, no. 2, pp. 423–440, 1999.

[3] F Darvas, JJ Ermer, JC Mosher, and Leahy RM, "Generic head models for atlas-based EEG source analysis," Human Brain Mapping, vol. 27, no. 2, pp. 129-143, 2006.

[4] JC Mosher, RM Leahy and P Lewis , "Multiple dipole modeling and localization from spatiotemporal MEG data, "IEEE Trans. Biomed. Eng., vol. 39, no. 5, pp. 541-557, June 1992.

[5] JW Phillips, RM Leahy, JC Mosher, "MEG-based imaging of focal neuronal current sources," IEEE Transactions on Medical Imaging, vol. 16, no. 3, pp. 338-348, June 1997.

[6] S Baillet and L Garnero, "A Bayesian approach to introducing anatomo-functional priors in the EEG /MEG inverse problem," IEEE Trans. Biomed. Eng., vol. 44, pp. 374-385, 1997.

[7] D Schmidt, J George and C Wood, "Bayesian inference applied to the electromagnetic inverse problem," Human Brain Mapping, vol. 7, pp. 195-212, 1999.

[8] GL Barkley and C Baumgartner, "MEG and EEG in epilepsy," Journal of Clinical Neurophysiology, vol. 20, no. 3, p. 163, 2003.

[9] A Arieli, A Sterkin, A Grinvald, and A Aertsen, "Dynamics of ongoing activity: explanation of the large variability in evoked cortical responses," Science, vol. 273, no. 5283, p. 1868, 1996.

[10] C Tallon-Baudry and O Bertrand, "Oscillatory gamma activity in humans and its role in object representation," Trends Cogn Sci, vol. 3, no. 4, pp. 151-162, 1999.

[11] G Pfurtscheller and FH Lopes da Silva, "Event-related EEG/MEG synchronization and desynchronization: basic principles," Clinical Neurophysiology, vol. 110, no. 11, pp. 1842-1857, 1999.

[12] P Tass, MG Rosenblum, J Weule, J Kurths, A Pikovsky, J Volkmann, A Schnitzler, and HJ Freund, "Detection of n: m phase locking from noisy data: application to magnetoencephalography," Physical Review Letters, vol. 81, no. 15, pp. 3291-3294, 1998.

[13] CWJ Granger, BN Huangb, and CW Yang, "A bivariate causality between stock prices and exchange rates: evidence from recent Asianflu," Quarterly Review of Economics and Finance, vol. 40, no. 3, pp. 337-354, 2000.

[14] W Hesse, E Moller, M Arnold, and B Schack, "The use of time-variant EEG Granger causality for inspecting directed interdependencies of neural assemblies," Journal of Neuroscience Methods, vol. 124, no. 1, pp. 27-44, 2003.

[15] HB Hui, D Pantazis, SL Bressler, and RM Leahy, "Identifying true cortical interactions in MEG using the nulling beamformer," NeuroImage, 2009.

[16] JLP Soto, D Pantazis, K Jerbi, JP Lachaux, S Baillet, and RM Leahy, "Canonical Correlation Analysis Applied to Functional Connectivity in MEG," IEEE International Symposium on Biomedical Imaging (ISBI), April 2010.

[17] D Pantazis, TE Nichols, S Baillet, and RM Leahy, "A Comparison of Random Field Theory and Permutation Methods for the Statistical Analysis of MEG data," Neuroimage, vol. 25, pp. 355-368, April 2005.

[18] S Baillet, JC Mosher, and RM Leahy, "Brainstorm beta release: a Matlab software package for MEG signal processing and source localization and visualization," Neuroimage, vol. 11, p. 915, 2000.

[19] JC Mosher, S Baillet, F Darvas, D Pantazis, E Kucukaltun-Yildirim, and RM Leahy, "Brainstorm Electromagnetic Imaging Software," IJBEM, vol. 7, no. 2, pp. 189-190, 2005.

[20] A Tzelepi, N Laskaris, A Amditis, and Z Kapoula, "Cortical activity preceding vertical saccades: A MEG study," Brain Research, 2010.

[21] F Amor, S Baillet, V Navarro, C Adam, J Martinerie, and MLV Quyen, "Cortical local and long-range synchronization interplay in human absence seizure initiation," Neuroimage, vol. 45, no. 3, pp. 950-962, April 2009.

[22] T Bekinschtein, S Dehaene, B Rohaut, F Tadel, L Cohen, and L Naccache, "Neural signature of the conscious processing of auditory regularities," PNAS, vol. 106, pp. 1672-1677, February 2009.

[23] F Carota, A Posada, S Harquel, C Delpuech, O Bertrand, and A Sirigu, "Neural Dynamics of the Intention to Speak," Cerebral Cortex, 2009.

[24] M Chaumon, D Hasboun, M Baulac, C Adam, and C Tallon-Baudry, "Unconscious contextual memory affects early responses in the anterior temporal lobe," Brain research, 2009.

[25] S Moratti and A Keil, "Not What You Expect: Experience but not Expectancy Predicts Conditioned Responses in Human Visual and Supplementary Cortex," Cerebral Cortex, 2009.

[26] D Pantazis, GV Simpson, DL Weber, CL Dale, TE Nichols, and RM Leahy, "A novel ANCOVA design for analysis of MEG data with application to a visual attention study," Neuroimage, vol. 44, no. 1, pp. 164–174, 2009.

[27] P Hansen, M Kringelbach, and R Salmelin (eds.), Meg: An Introduction to Methods.: Oxford University Press, 2010.

[28] R Salmelin and S Baillet, "Electromagnetic brain imaging," Human Brain Mapping, vol. 30, pp. 1753-1757, 2009.

[29] The MoinMoin Wiki Engine, http://moinmo.in/

[30] vBulletin, http://www.vbulletin.com/

[31] DW Shattuck and RM Leahy, "BrainSuite: An Automated Cortical Surface Identification Tool," Medical Image Analysis, vol. 8, no. 2, pp. 129-142, 2002, http://neuroimage.usc.edu/brainsuite/.

[32] Y Cointepas, Manginm JF, L Garnero, JB Poline, and H Benali, "BrainVISA: Software platform for visualization and analysis of multi-modality brain data," Neuroimage, vol. 13, no. 6, p. S98, 2001, http://brainvisa.free.fr.

[33] FreeSurfer, http://surfer.nmr.mgh.harvard.edu/

[34] FieldTrip, Donders Institute for Brain, Cognition and Behaviour: http://fieldtrip.fcdonders.nl

[35] A Delorme and S Makeig, "EEGLAB: an open source toolbox for analysis of single-trial EEG dynamics," J Neurosci Methods, vol. 134, pp. 9-21, 2004, http://www.sccn.ucsd.edu/eeglab.

[36] MS Hämäläinen. MNE software. http://www.nmr.mgh.harvard.edu/martinos/userInfo/data/sofMNE.php

[37] DL Collins, AP Zijdenbos, V Kollokian, JG Sled, NJ Kabani, CJ Holmes, and AC Evans, "Design and construction of a realistic digital brain phantom," IEEE Transactions on Medical Imaging, vol. 17, no. 3, p. 463, 1998.

[38] RM Leahy, JC Mosher, ME Spencer, MX Huang, and JD Lewine, "A study of dipole localization accuracy for MEG and EEG using a human skull phantom," Electroencephalography and clinical neurophysiology, vol. 107, no. 2, pp. 159-173, 1998.

[39] F Darvas, D Pantazis, E Kucukaltun-Yildirim, and RM Leahy, "Mapping human brain function with MEG and EEG: methods and validation," NeuroImage, vol. 23, pp. 289-299, 2004.

[40] P Berg and M Scherg, "A fast method for forward computation of multiple-shell spherical head models," Electroencephalogr Clin. Neurophysiol, vol. 90, pp. 58–64, 1994.

[41] A Gramfort, T Papadopoulo, E Olivi, and M Clerc, "OpenMEEG: Open-source software for quasistatic bioelectromagnetics," 2010, http://openmeeg.gforge.inria.fr.

[42] MS Hämäläinen and RJ Ilmoniemi, "Interpreting magnetic fields of the brain: minimum norm estimates," Medical and Biological Engineering and Computing, vol. 32, no. 1, pp. 35-42, 1994.

[43] AM Dale, AK Liu, BR Fischl, RL Buckner, JW Belliveau, JD Lewine, and E Halgren, "Dynamic Statistical Parametric Mapping: Combining fMRI and MEG for High-Resolution Imaging of Cortical Activity," Neuron, vol. 26, no. 1, pp. 55-67, 2000.

[44] RD Pascual-Marqui, "Standardized low-resolution brain electromagnetic tomography (sLORETA): technical details," Methods Find Exp Clin Pharmacol, vol. 24, no. Suppl D, pp. 5-12, 2002.

[45] BD Van Veen and KM Buckley, "Beamforming: A versatile approach to spatial filtering," IEEE assp magazine, vol. 5, no. 2, pp. 4-24, 1988.

[46] RO Schmidt, "Multiple emitter location and signal parameter estimation," IEEE Trans. Antennas Propagat., vol. AP-34, pp. 276–280, March 1986, Reprint of the original 1979 paper from the RADC Spectrum Estimation Workshop.

[47] N Tzourio-Mazoyer, Landeaum B, D Papathanassiou, F Crivello, O Etard, N Delcroix, B Mazoyer, and M Joliot, "Automated anatomical labeling of activations in SPM using a macroscopic anatomical parcellation of the MNI MRI single-subject brain," Neuroimage, vol. 15, no. 1, pp. 273-289, January 2002.

[48] C Tallon-Baudry, O Bertrand, C Wienbruch, B Ross, and C Pantev, "Combined EEG and MEG recordings of visual 40 Hz responses to illusory triangles in human," Neuroreport, vol. 8, no. 5, p. 1103, 1997.

[49] MS Worden, JJ Foxe, N Wang, and GV Simpson, "Anticipatory biasing of visuospatial attention indexed by retinotopically specific alpha-band electroencephalography increases over occipital cortex," Journal of Neuroscience, vol. 20, no. 6, p. 63, 2000.

[50] W Klimesch, M Doppelmayr, T Pachinger, and B Ripper, "Brain oscillations and human memory: EEG correlates in the upper alpha and theta band," Neuroscience letters, vol. 238, no. 1-2, pp. 9-12, 1997.

[51] O Jensen and CD Tesche, "Frontal theta activity in humans increases with memory load in a working memory task," European Journal of Neuroscience, vol. 15, no. 8, pp. 1395-1399, 2002.

[52] W Klimesch, M Doppelmayr, H Russegger, T Pachinger, and J Schwaiger, "Induced alpha band power changes in the human EEG and attention," Neuroscience Letters, vol. 244, no. 2, pp. 73-76, 1998.

[53] CS Herrmann, M Grigutsch, and NA Busch, "EEG oscillations and wavelet analysis," Event-Related Potentials-A Methods Handbook, pp. 229-259, 2005.

[54] CE McCulloch and SR Searle, "Generalized, linear, and mixed models," 2001.

[55] WD Penny, AP Holmes, and KJ Friston, "Random effects analysis," Human brain function, vol. 2, pp. 843-850, 2004.

[56] D Pantazis and RM Leahy, Meg: An Introduction to Methods; Chapter 10: Statistical Inference in MEG Distributed Source Imaging.: Oxford Univ Pr, 2010.

[57] JA Mumford and T Nichols, "Modeling and inference of multisubject fMRI data," IEEE Engineering in Medicine and Biology Magazine, pp. 42–51, March/April 2006.

[58] Y Benjamini and Y Hochberg, "Controlling the false discovery rate: a practical and powerful approach to multiple testing," Journal of the Royal Statistical Society. Series B (Methodological), vol. 57, no. 1, pp. 289-300, 1995.

[59] T Nichols and S Hayasaka, "Controlling the familywise error rate in functional neuroimaging: a comparative review," Statistical methods in medical research, vol. 12, no. 5, p. 419, 2003.

[60] DJ Kroon, "Iterative Closest Point using finite difference optimization to register 3D point clouds affine," Available for download at http://www.mathworks.com/matlabcentral/fileexchange/24301-finite-iterative-closest-point.

[61] D Shepard, "A two-dimensional interpolation function for irregularly-spaced data," Proceedings of the ACM National Conference, pp. 517–524, 1968.

[62] A Joshi, DW Shattuck, PM Thompson and RM Leahy, "Simultaneous Surface and Volumetric Brain Registration Using Harmonic Mappings," IEEE Trans. Med. Imag, vol. 26, no. 12, pp. 1657-1669, 2007.

[63] JLP Soto, D Pantazis, K Jerbi, JP Lachaux, L Garnero, and RM Leahy, "Detection of Event-Related Modulations of Oscillatory Brain Activity with Multivariate Statistical Analysis of MEG Data," Human Brain Mapping, vol. 30, pp. 1922-1934, 2009.

[64] J Lefèvre and S Baillet, "Optical flow approaches to the identification of brain dynamics," Human Brain Mapping, vol. 30, pp. 1887-1897, 2009.

[65] SPM, http://www.fil.ion.ucl.ac.uk/spm/

Pub (last edited 2012-01-12 20:34:48 by grumio)